Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015951001 Vitis vinifera HOM05D002568 ORTHO05D002814 7.9e-55 216.9 109 100.0
GSVIVG01002016001 Vitis vinifera HOM05D002568 ORTHO05D002814 3.4e-13 78.6 55 72.7
GSVIVG01004130001 Vitis vinifera HOM05D002568 ORTHO05D002814 3.4e-13 78.6 55 72.7
GSVIVG01004133001 Vitis vinifera HOM05D002568 ORTHO05D002814 1.3e-12 76.6 55 69.1
COL.COLO4_34290 Corchorus olitorius HOM05D002568 ORTHO05D002814 2.9e-12 75.5 50 72.0
Dinv07632 Davidia involucrata HOM05D002568 ORTHO05D002814 8.3e-12 73.9 52 69.2
AT5G48370 Arabidopsis thaliana HOM05D002568 ORTHO05D002814 1.4e-11 73.2 51 70.6
MD10G1147100 Malus domestica HOM05D002568 ORTHO05D002814 1.4e-11 73.2 51 68.6
QL09p045558 Quercus lobata HOM05D002568 ORTHO05D002814 1.4e-11 73.2 52 67.3
AL8G21130 Arabidopsis lyrata HOM05D002568 ORTHO05D002814 1.9e-11 72.8 51 70.6
Carub.0008s0794 Capsella rubella HOM05D002568 ORTHO05D002814 1.9e-11 72.8 51 70.6
Hma1.2p1_1289F.1_g273330 Hydrangea macrophylla HOM05D002568 ORTHO05D002814 1.9e-11 72.8 47 72.3
Hma1.2p1_1629F.1_g294520 Hydrangea macrophylla HOM05D002568 ORTHO05D002814 1.9e-11 72.8 47 72.3
ClCG09G008000 Citrullus lanatus HOM05D002568 ORTHO05D002814 3.2e-11 72.0 54 64.8
Aa31sc757G30 Aethionema arabicum HOM05D002568 ORTHO05D002814 4.1e-11 71.6 59 61.0
Gohir.A07G195200 Gossypium hirsutum HOM05D002568 ORTHO05D002814 4.1e-11 71.6 50 70.0
Gohir.D07G201600 Gossypium hirsutum HOM05D002568 ORTHO05D002814 4.1e-11 71.6 50 70.0
Gorai.001G226300 Gossypium raimondii HOM05D002568 ORTHO05D002814 4.1e-11 71.6 50 70.0
MD05G1152600 Malus domestica HOM05D002568 ORTHO05D002814 5.4e-11 71.2 48 70.8
Sed0018281 Sechium edule HOM05D002568 ORTHO05D002814 5.4e-11 71.2 53 66.0
QL09p045614 Quercus lobata HOM05D002568 ORTHO05D002814 7.0e-11 70.9 52 65.4
Rhsim01G0247100 Rhododendron simsii HOM05D002568 ORTHO05D002814 7.0e-11 70.9 47 70.2
Duzib133G0382 Durio zibethinus HOM05D002568 ORTHO05D002814 9.2e-11 70.5 50 68.0
Duzib138G1009 Durio zibethinus HOM05D002568 ORTHO05D002814 9.2e-11 70.5 50 68.0
Phvul.008G050200 Phaseolus vulgaris HOM05D002568 ORTHO05D002814 9.2e-11 70.5 47 68.1
CARHR183840 Cardamine hirsuta HOM05D002568 ORTHO05D002814 1.2e-10 70.1 47 72.3
Manes.12G054500 Manihot esculenta HOM05D002568 ORTHO05D002814 1.2e-10 70.1 47 72.3
Actinidia23805 Actinidia chinensis HOM05D002568 ORTHO05D002814 1.6e-10 69.7 47 68.1
CANSAT25G2165 Cannabis sativa HOM05D002568 ORTHO05D002814 2.0e-10 69.3 48 68.8
FvH4_2g17370 Fragaria vesca HOM05D002568 ORTHO05D002814 2.0e-10 69.3 48 68.8
FAN15G1490 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.0e-10 69.3 48 68.8
FAN24G2975 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.0e-10 69.3 48 68.8
FAN25G2449 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.0e-10 69.3 48 68.8
FAN27G1554 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.0e-10 69.3 48 68.8
Atru.chr6.3501 Acer truncatum HOM05D002568 ORTHO05D002814 2.7e-10 68.9 54 63.0
Actinidia34528 Actinidia chinensis HOM05D002568 ORTHO05D002814 2.7e-10 68.9 47 66.0
BcaB04g19571 Brassica carinata HOM05D002568 ORTHO05D002814 2.7e-10 68.9 44 75.0
BolC9t53399H Brassica oleracea HOM05D002568 ORTHO05D002814 2.7e-10 68.9 44 75.0
Gohir.A11G144200 Gossypium hirsutum HOM05D002568 ORTHO05D002814 2.7e-10 68.9 45 73.3
Gohir.D11G150600 Gossypium hirsutum HOM05D002568 ORTHO05D002814 2.7e-10 68.9 45 73.3
Gorai.007G161500 Gossypium raimondii HOM05D002568 ORTHO05D002814 2.7e-10 68.9 45 73.3
Sp2g18720 Schrenkiella parvula HOM05D002568 ORTHO05D002814 2.7e-10 68.9 44 75.0
vmacro14682 Vaccinium macrocarpon HOM05D002568 ORTHO05D002814 2.7e-10 68.9 47 70.2
Cpa.g.sc8.31 Carica papaya HOM05D002568 ORTHO05D002814 3.5e-10 68.6 47 68.1
RcHm_v2.0_Chr6g0282021 Rosa chinensis HOM05D002568 ORTHO05D002814 3.5e-10 68.6 52 65.4
Thecc.01G206100 Theobroma cacao HOM05D002568 ORTHO05D002814 3.5e-10 68.6 50 64.0
TWI36G0653 Tripterygium wilfordii HOM05D002568 ORTHO05D002814 3.5e-10 68.6 51 60.8
TWI36G0996 Tripterygium wilfordii HOM05D002568 ORTHO05D002814 3.5e-10 68.6 51 60.8
BcaC04g23781 Brassica carinata HOM05D002568 ORTHO05D002814 4.6e-10 68.2 44 75.0
A09p04400 Brassica napus HOM05D002568 ORTHO05D002814 4.6e-10 68.2 44 75.0
C09p04710 Brassica napus HOM05D002568 ORTHO05D002814 4.6e-10 68.2 44 75.0
BraA09t36077Z Brassica rapa HOM05D002568 ORTHO05D002814 4.6e-10 68.2 44 75.0
CANSAT25G3830 Cannabis sativa HOM05D002568 ORTHO05D002814 6.0e-10 67.8 48 66.7
Eucgr.H00690 Eucalyptus grandis HOM05D002568 ORTHO05D002814 6.0e-10 67.8 47 68.1
THA.LOC104822458 Tarenaya hassleriana HOM05D002568 ORTHO05D002814 6.0e-10 67.8 47 68.1
ECA248G2967 Erigeron canadensis HOM05D002568 ORTHO05D002814 7.8e-10 67.4 47 68.1
Migut.D00768 Erythranthe guttata HOM05D002568 ORTHO05D002814 1.3e-09 66.6 47 66.0
Glyma.18G246900 Glycine max HOM05D002568 ORTHO05D002814 1.7e-09 66.2 47 68.1
HanXRQChr01g0014181 Helianthus annuus HOM05D002568 ORTHO05D002814 1.7e-09 66.2 51 62.7
Potri.014G174800 Populus trichocarpa HOM05D002568 ORTHO05D002814 1.7e-09 66.2 47 66.0
CiPaw.13G056900 Carya illinoinensis HOM05D002568 ORTHO05D002814 2.3e-09 65.9 49 65.3
Potri.002G240100 Populus trichocarpa HOM05D002568 ORTHO05D002814 2.3e-09 65.9 47 68.1
Sabra14G0133900 Salix brachista HOM05D002568 ORTHO05D002814 2.3e-09 65.9 54 59.3
SGA_v2.0_scaffold158G37524 Striga asiatica HOM05D002568 ORTHO05D002814 2.3e-09 65.9 47 66.0
VMungo1383G3733 Vigna mungo HOM05D002568 ORTHO05D002814 2.3e-09 65.9 47 66.0
CSS0008807 Camellia sinensis var. sinensis HOM05D002568 ORTHO05D002814 3.0e-09 65.5 47 68.1
Glyma.09G246100 Glycine max HOM05D002568 ORTHO05D002814 3.0e-09 65.5 47 66.0
PGR083G2489 Punica granatum HOM05D002568 ORTHO05D002814 3.0e-09 65.5 47 68.1
arahy.Tifrunner.gnm1.ann1.0B2YB3 Arachis hypogaea HOM05D002568 ORTHO05D002814 3.9e-09 65.1 47 66.0
arahy.Tifrunner.gnm1.ann1.M15CPW Arachis hypogaea HOM05D002568 ORTHO05D002814 3.9e-09 65.1 47 66.0
FAN14G0413 Fragaria x ananassa HOM05D002568 ORTHO05D002814 3.9e-09 65.1 48 66.7
FAN14G3488 Fragaria x ananassa HOM05D002568 ORTHO05D002814 3.9e-09 65.1 48 66.7
FAN14G4312 Fragaria x ananassa HOM05D002568 ORTHO05D002814 3.9e-09 65.1 48 66.7
Medtr7g080930 Medicago truncatula HOM05D002568 ORTHO05D002814 3.9e-09 65.1 47 66.0
CiPaw.13G057000 Carya illinoinensis HOM05D002568 ORTHO05D002814 5.0e-09 64.7 49 65.3
MELO3C012718.2 Cucumis melo HOM05D002568 ORTHO05D002814 5.0e-09 64.7 45 68.9
Lsat_1_v5_gn_5_176401 Lactuca sativa HOM05D002568 ORTHO05D002814 5.0e-09 64.7 48 66.7
Lj2A1110G52 Lonicera japonica HOM05D002568 ORTHO05D002814 5.0e-09 64.7 47 66.0
Sabra02G0182900 Salix brachista HOM05D002568 ORTHO05D002814 5.0e-09 64.7 53 64.2
Ca_08037_v3 Cicer arietinum L. HOM05D002568 ORTHO05D002814 6.6e-09 64.3 47 66.0
Haze_03533 Corylus avellana HOM05D002568 ORTHO05D002814 6.6e-09 64.3 49 63.3
Haze_03538 Corylus avellana HOM05D002568 ORTHO05D002814 6.6e-09 64.3 49 63.3
Psat3g100640 Pisum sativum HOM05D002568 ORTHO05D002814 6.6e-09 64.3 47 66.0
Lj1g0021459 Lotus japonicus HOM05D002568 ORTHO05D002814 8.6e-09 63.9 47 63.8
Oeu011818.1 Olea europaea HOM05D002568 ORTHO05D002814 8.6e-09 63.9 57 54.4
TPR.G28110 Trifolium pratense HOM05D002568 ORTHO05D002814 1.1e-08 63.5 47 63.8
Cfa010608 Carpinus fangiana HOM05D002568 ORTHO05D002814 1.9e-08 62.8 47 63.8
CsaV3_7G027080 Cucumis sativus L. HOM05D002568 ORTHO05D002814 1.9e-08 62.8 45 66.7
Solyc09g042750.3 Solanum lycopersicum HOM05D002568 ORTHO05D002814 1.9e-08 62.8 45 64.4
Sopen09g015740 Solanum pennellii HOM05D002568 ORTHO05D002814 1.9e-08 62.8 45 64.4
FvH4_6g02780 Fragaria vesca HOM05D002568 ORTHO05D002814 2.5e-08 62.4 50 64.0
Nitab4.5_0005165g0020 Nicotiana tabacum HOM05D002568 ORTHO05D002814 2.5e-08 62.4 47 61.7
Ciclev10015268m.g Citrus clementina HOM05D002568 ORTHO05D002814 4.3e-08 61.6 51 62.7
DCAR_000182 Daucus carota HOM05D002568 ORTHO05D002814 4.3e-08 61.6 45 66.7
Lalb_Chr03g0040581 Lupinus albus HOM05D002568 ORTHO05D002814 4.3e-08 61.6 47 61.7
Peaxi162Scf00235g00011 Petunia axillaris HOM05D002568 ORTHO05D002814 4.3e-08 61.6 46 63.0
MSTRG.18508 Avicennia marina HOM05D002568 ORTHO05D002814 5.6e-08 61.2 47 61.7
Cc01_g15800 Coffea canephora HOM05D002568 ORTHO05D002814 5.6e-08 61.2 46 63.0
Nitab4.5_0001177g0090 Nicotiana tabacum HOM05D002568 ORTHO05D002814 5.6e-08 61.2 47 61.7
Hund09489 Selenicereus undatus HOM05D002568 ORTHO05D002814 7.3e-08 60.8 47 63.8
Sc17g0001520 Simmondsia chinensis HOM05D002568 ORTHO05D002814 1.2e-07 60.1 47 63.8
Lj4g0020278 Lotus japonicus HOM05D002568 ORTHO05D002814 1.6e-07 59.7 46 67.4
CiPaw.01G199000 Carya illinoinensis HOM05D002568 ORTHO05D002814 2.8e-07 58.9 46 63.0
FvH4_1g00450 Fragaria vesca HOM05D002568 ORTHO05D002814 2.8e-07 58.9 46 58.7
FAN26G0485 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.8e-07 58.9 46 58.7
FAN28G2796 Fragaria x ananassa HOM05D002568 ORTHO05D002814 2.8e-07 58.9 46 58.7
Eucgr.L00021 Eucalyptus grandis HOM05D002568 ORTHO05D002814 3.6e-07 58.5 46 60.9
Glyma.02G139600 Glycine max HOM05D002568 ORTHO05D002814 3.6e-07 58.5 52 61.5
MSTRG.12739 Avicennia marina HOM05D002568 ORTHO05D002814 4.7e-07 58.2 47 57.4
AUR62028633 Chenopodium quinoa HOM05D002568 ORTHO05D002814 4.7e-07 58.2 48 56.2
Actinidia18406 Actinidia chinensis HOM05D002568 ORTHO05D002814 6.2e-07 57.8 47 61.7
AUR62008057 Chenopodium quinoa HOM05D002568 ORTHO05D002814 6.2e-07 57.8 47 57.4
RcHm_v2.0_Chr2g0084961 Rosa chinensis HOM05D002568 ORTHO05D002814 6.2e-07 57.8 46 58.7
Ah.11g050750 Amaranthus hybridus HOM05D002568 ORTHO05D002814 8.0e-07 57.4 46 56.5
Rhsim09G0007600 Rhododendron simsii HOM05D002568 ORTHO05D002814 1.1e-06 57.0 47 59.6
SEGI_01235 Sequoiadendron giganteum HOM05D002568 ORTHO05D002814 1.1e-06 57.0 48 58.3
TWI38G0173 Tripterygium wilfordii HOM05D002568 ORTHO05D002814 1.1e-06 57.0 46 60.9
TAR633G0356 Trochodendron aralioides HOM05D002568 ORTHO05D002814 1.1e-06 57.0 46 60.9
Atru.chr3.1947 Acer truncatum HOM05D002568 ORTHO05D002814 1.4e-06 56.6 46 58.7
Ciclev10019655m.g Citrus clementina HOM05D002568 ORTHO05D002814 1.4e-06 56.6 46 56.5
Cc03_g15050 Coffea canephora HOM05D002568 ORTHO05D002814 1.4e-06 56.6 47 57.4
Migut.G00835 Erythranthe guttata HOM05D002568 ORTHO05D002814 1.4e-06 56.6 45 62.2
PGR042G1407 Punica granatum HOM05D002568 ORTHO05D002814 1.4e-06 56.6 46 63.0
Dinv18306 Davidia involucrata HOM05D002568 ORTHO05D002814 1.8e-06 56.2 46 60.9
MD15G1147000 Malus domestica HOM05D002568 ORTHO05D002814 1.8e-06 56.2 46 60.9
QL10p059268 Quercus lobata HOM05D002568 ORTHO05D002814 1.8e-06 56.2 45 62.2
AT2G30720 Arabidopsis thaliana HOM05D002568 ORTHO05D002814 2.3e-06 55.8 45 62.2
MSTRG.4310 Avicennia marina HOM05D002568 ORTHO05D002814 2.3e-06 55.8 45 62.2
CANSAT56G3638 Cannabis sativa HOM05D002568 ORTHO05D002814 2.3e-06 55.8 46 60.9
Carub.0004s1190 Capsella rubella HOM05D002568 ORTHO05D002814 2.3e-06 55.8 45 62.2
CARHR124220 Cardamine hirsuta HOM05D002568 ORTHO05D002814 2.3e-06 55.8 45 62.2
Rhsim01G0247000 Rhododendron simsii HOM05D002568 ORTHO05D002814 2.3e-06 55.8 62 50.0
Aa31LG5G6110 Aethionema arabicum HOM05D002568 ORTHO05D002814 3.1e-06 55.5 45 64.4
Cfa022631 Carpinus fangiana HOM05D002568 ORTHO05D002814 3.1e-06 55.5 45 62.2
CDE09G1282 Ceratophyllum demersum HOM05D002568 ORTHO05D002814 3.1e-06 55.5 48 58.3
Haze_11171 Corylus avellana HOM05D002568 ORTHO05D002814 3.1e-06 55.5 45 62.2
Haze_11176 Corylus avellana HOM05D002568 ORTHO05D002814 3.1e-06 55.5 45 62.2
Gohir.A10G146400 Gossypium hirsutum HOM05D002568 ORTHO05D002814 3.1e-06 55.5 45 62.2
Gohir.D10G120600 Gossypium hirsutum HOM05D002568 ORTHO05D002814 3.1e-06 55.5 45 62.2
Thecc.04G161900 Theobroma cacao HOM05D002568 ORTHO05D002814 3.1e-06 55.5 46 60.9
AL4G25620 Arabidopsis lyrata HOM05D002568 ORTHO05D002814 4.0e-06 55.1 45 62.2
EL10Ac5g10579 Beta vulgaris HOM05D002568 ORTHO05D002814 4.0e-06 55.1 47 57.4
Lj6C269G8 Lonicera japonica HOM05D002568 ORTHO05D002814 4.0e-06 55.1 46 58.7
Eucgr.G01596 Eucalyptus grandis HOM05D002568 ORTHO05D002814 5.2e-06 54.7 46 58.7
Eucgr.L00029 Eucalyptus grandis HOM05D002568 ORTHO05D002814 5.2e-06 54.7 46 58.7
Thhalv10016640m.g Eutrema salsugineum HOM05D002568 ORTHO05D002814 5.2e-06 54.7 45 60.0
Thhalv10017006m.g Eutrema salsugineum HOM05D002568 ORTHO05D002814 5.2e-06 54.7 45 60.0
vmacro00710 Vaccinium macrocarpon HOM05D002568 ORTHO05D002814 5.2e-06 54.7 47 57.4
VMungo0251G0602 Vigna mungo HOM05D002568 ORTHO05D002814 5.2e-06 54.7 47 59.6
A04p23430 Brassica napus HOM05D002568 ORTHO05D002814 6.8e-06 54.3 45 60.0
C04p59730 Brassica napus HOM05D002568 ORTHO05D002814 6.8e-06 54.3 45 60.0
BraA04t17870Z Brassica rapa HOM05D002568 ORTHO05D002814 6.8e-06 54.3 45 60.0
Glyma.07G205900 Glycine max HOM05D002568 ORTHO05D002814 6.8e-06 54.3 47 63.8
Gorai.011G132500 Gossypium raimondii HOM05D002568 ORTHO05D002814 6.8e-06 54.3 45 60.0
Sp4g13240 Schrenkiella parvula HOM05D002568 ORTHO05D002814 6.8e-06 54.3 45 60.0
Duzib151G1150 Durio zibethinus HOM05D002568 ORTHO05D002814 8.9e-06 53.9 46 56.5
Manes.01G017700 Manihot esculenta HOM05D002568 ORTHO05D002814 8.9e-06 53.9 46 58.7
Nn7g37493 Nelumbo nucifera HOM05D002568 ORTHO05D002814 8.9e-06 53.9 46 56.5
THA.LOC104826251 Tarenaya hassleriana HOM05D002568 ORTHO05D002814 8.9e-06 53.9 46 58.7
unitig_747.g21728 Utricularia gibba HOM05D002568 ORTHO05D002814 8.9e-06 53.9 45 60.0


User provided reference genes

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