Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 0.0e+00 1237.6 633 100.0
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.8e-237 825.5 642 68.7
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 2.2e-226 789.3 639 66.4
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 3.4e-222 775.4 638 63.9
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 7.5e-222 774.2 640 65.0
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.3e-221 773.5 645 64.5
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.7e-218 763.1 636 64.6
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.8e-216 755.7 662 61.9
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.8e-216 755.7 641 65.2
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 2.6e-214 749.2 640 64.5
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 6.4e-213 744.6 642 63.7
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 4.4e-206 721.8 642 63.9
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 3.7e-205 718.8 637 60.3
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.9e-204 716.5 670 59.4
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 9.2e-204 714.1 635 60.2
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 3.5e-203 712.2 638 60.5
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.0e-202 710.7 638 60.5
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 6.6e-202 708.0 637 59.7
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 3.3e-201 705.7 702 57.5
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 9.8e-198 694.1 650 58.8
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 3.7e-197 692.2 635 59.5
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 3.7e-197 692.2 650 58.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.4e-197 691.4 654 59.3
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.2e-196 687.6 638 59.7
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 4.6e-195 685.3 637 58.7
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 9.5e-193 677.6 638 59.1
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 7.6e-190 667.9 506 69.8
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.4e-188 662.9 657 56.6
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.6e-187 660.2 637 57.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.0e-186 657.5 637 57.6
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.9e-186 655.6 637 57.3
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 3.9e-186 655.6 639 57.1
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 6.6e-186 654.8 632 56.3
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 8.6e-186 654.4 645 55.3
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.1e-185 654.1 375 89.6
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.3e-185 652.1 647 56.1
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.8e-184 649.4 641 59.9
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.8e-184 649.4 641 58.7
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 8.1e-184 647.9 637 56.5
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 4.0e-183 645.6 652 55.2
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.2e-183 645.2 648 55.7
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 8.4e-181 637.9 670 54.0
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.4e-180 637.1 649 54.9
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 7.1e-180 634.8 638 55.8
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 7.1e-180 634.8 640 54.1
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 9.3e-180 634.4 638 55.5
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 8.7e-178 627.9 643 53.5
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 1.5e-177 627.1 638 54.1
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.5e-177 626.3 644 53.4
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.6e-176 623.6 640 55.3
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 2.8e-176 622.9 639 54.8
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 6.2e-176 621.7 644 54.2
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 8.1e-176 621.3 642 55.6
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.1e-175 620.9 648 53.1
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 5.3e-175 618.6 638 54.7
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.9e-175 618.2 647 54.7
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.2e-174 617.5 639 54.9
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 1.2e-174 617.5 696 52.4
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.6e-174 616.3 617 54.5
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.4e-174 615.5 636 54.6
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 9.9e-174 614.4 645 55.3
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 2.9e-173 612.8 649 53.6
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 4.9e-173 612.1 641 54.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.6e-171 607.1 655 53.6
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.7e-171 606.3 639 54.0
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 3.5e-171 605.9 637 54.0
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.3e-170 604.0 648 53.1
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 6.6e-170 601.7 644 55.1
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.1e-169 600.9 641 54.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 2.5e-169 599.7 613 55.3
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.6e-169 597.8 651 51.8
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.8e-168 595.5 636 53.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 8.1e-168 594.7 636 53.8
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.4e-167 594.0 644 52.0
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.8e-167 593.6 667 51.6
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 5.3e-167 592.0 649 54.2
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.5e-166 590.5 644 52.3
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.5e-166 590.5 667 51.4
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.4e-164 583.9 653 52.2
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.9e-164 583.6 641 51.3
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.0e-162 577.8 636 53.3
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 1.8e-162 577.0 640 52.7
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.3e-162 576.6 642 51.7
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 3.0e-162 576.2 639 52.0
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.9e-162 575.9 641 52.0
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.1e-161 574.3 641 51.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.3e-161 572.4 641 50.4
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 9.6e-161 571.2 643 49.6
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.8e-159 567.0 643 49.3
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.1e-156 555.1 643 50.1
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 2.7e-155 553.1 611 49.8
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 3.0e-154 549.7 638 50.2
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.1e-153 547.7 505 59.0
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.5e-153 546.6 395 71.4
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.3e-153 546.2 650 50.3
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 7.4e-153 545.0 648 50.6
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.3e-152 544.3 643 51.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.5e-150 537.3 641 47.4
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.9e-150 535.4 654 48.9
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.3e-149 534.3 642 48.9
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.3e-149 534.3 644 50.5
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.2e-147 527.7 567 53.8
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.3e-146 524.2 649 47.5
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 8.7e-146 521.5 640 50.2
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 3.3e-145 519.6 616 48.2
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 5.7e-145 518.8 637 48.4
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.2e-144 516.9 421 65.6
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 4.8e-144 515.8 637 45.8
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 8.2e-144 515.0 636 45.6
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 3.1e-143 513.1 662 44.6
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 2.0e-142 510.4 611 46.8
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 7.7e-142 508.4 614 49.0
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 3.8e-141 506.1 638 46.4
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.9e-140 503.8 641 45.7
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 3.2e-140 503.1 637 44.7
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 9.4e-140 501.5 637 44.9
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 3.9e-138 496.1 638 46.4
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.1e-137 494.6 636 44.8
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 4.3e-137 492.7 638 45.9
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.2e-136 490.3 619 47.0
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.4e-134 483.0 582 49.3
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 7.7e-134 481.9 638 46.1
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 3.8e-133 479.6 638 45.9
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.2e-131 474.6 608 46.4
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 3.0e-130 469.9 616 47.7
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.3e-128 464.5 609 45.2
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.8e-125 453.0 352 66.2
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.7e-121 439.1 381 63.3
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 7.0e-119 432.2 561 46.9
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.6e-113 413.7 507 48.3
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.7e-107 392.9 325 64.6
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.4e-106 391.3 623 43.5
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 9.8e-97 358.6 256 69.1
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.1e-92 345.1 397 51.4
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.4e-90 338.2 388 52.1
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.6e-78 296.6 701 32.0
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.0e-78 296.2 429 44.8
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 3.3e-76 290.4 260 62.7
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 3.4e-73 280.4 603 35.3
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 9.2e-71 272.3 205 66.3
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.6e-70 271.6 442 37.8
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.6e-69 265.8 233 66.1
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 9.6e-68 262.3 651 32.4
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 9.6e-68 262.3 491 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 4.7e-67 260.0 423 37.6
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.0e-65 254.6 457 38.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.2e-64 251.1 237 54.0
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.1e-63 248.8 256 55.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 3.2e-63 247.3 243 53.5
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-57 228.0 257 53.7
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 8.1e-51 206.1 179 62.0
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-46 192.2 287 40.4
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 6.0e-46 189.9 291 40.5
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-45 189.1 282 40.8
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 8.7e-45 186.0 205 54.1
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 8.2e-43 179.5 254 44.9
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.1e-42 179.1 261 44.8
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.2e-40 171.4 95 92.6
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.5e-36 158.7 386 30.8
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.7e-36 156.0 220 41.8
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.1e-35 154.8 142 57.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.7e-35 154.1 196 43.9
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.3e-34 150.2 196 43.9
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.6e-22 110.5 65 86.2
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.0e-20 105.1 280 33.9
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 4.4e-20 104.0 91 61.5
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 7.4e-20 103.2 188 36.2
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.8e-18 98.6 96 50.0
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 7.7e-17 93.2 82 53.7
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 4.4e-12 77.4 198 30.3
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 5.7e-12 77.0 91 47.3
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 7.7e-09 66.6 215 30.7
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.8e-08 64.3 99 43.4
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 8.5e-08 63.2 50 64.0
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.9e-07 62.0 156 33.3


User provided reference genes

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