Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.5e-36 154.5 79 100.0
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.4e-32 142.5 79 93.7
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-18 95.9 79 64.6
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 7.6e-15 83.6 81 71.6
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.9e-14 81.6 76 68.4
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.9e-14 80.9 80 68.8
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.9e-14 80.9 80 68.8
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.1e-13 79.7 80 63.8
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.4e-13 79.3 88 59.1
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 5.4e-13 77.4 79 63.3
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 9.3e-13 76.6 77 62.3
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 9.3e-13 76.6 54 75.9
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.2e-12 76.3 76 64.5
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.2e-12 76.3 84 56.0
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.6e-12 75.9 75 64.0
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.6e-12 75.9 82 65.9
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.1e-12 75.5 84 63.1
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.1e-12 75.5 71 66.2
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.1e-12 75.5 75 64.0
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.1e-12 75.5 79 62.0
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.7e-12 75.1 73 61.6
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.7e-12 75.1 73 61.6
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 2.7e-12 75.1 82 58.5
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.6e-12 74.3 79 62.0
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 6.0e-12 73.9 68 69.1
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.3e-11 72.8 82 63.4
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.3e-11 72.8 66 66.7
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.3e-11 72.8 75 58.7
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.8e-11 72.4 82 63.4
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 3.9e-11 71.2 57 66.7
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 5.1e-11 70.9 74 62.2
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 5.1e-11 70.9 74 62.2
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.1e-11 70.9 84 59.5
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 6.7e-11 70.5 72 63.9
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 6.7e-11 70.5 73 64.4
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 8.7e-11 70.1 76 65.8
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.7e-11 70.1 75 65.3
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 8.7e-11 70.1 74 60.8
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.1e-10 69.7 73 61.6
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.9e-10 68.9 74 59.5
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.5e-10 68.6 63 65.1
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.3e-10 68.2 70 64.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.3e-10 68.2 55 72.7
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 4.3e-10 67.8 77 59.7
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.3e-10 67.8 54 72.2
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 5.6e-10 67.4 83 57.8
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 5.6e-10 67.4 83 57.8
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 5.6e-10 67.4 81 50.6
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 7.4e-10 67.0 74 58.1
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 7.4e-10 67.0 81 55.6
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 9.6e-10 66.6 65 66.2
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 9.6e-10 66.6 72 59.7
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.3e-09 66.2 70 57.1
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.3e-09 66.2 79 54.4
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 2.1e-09 65.5 53 69.8
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.8e-09 65.1 79 54.4
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 2.8e-09 65.1 72 59.7
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.7e-09 64.7 73 56.2
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 3.7e-09 64.7 81 54.3
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 3.7e-09 64.7 69 62.3
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 4.8e-09 64.3 71 63.4
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 6.2e-09 63.9 72 63.9
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 6.2e-09 63.9 72 61.1
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 8.1e-09 63.5 79 51.9
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 8.1e-09 63.5 79 51.9
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 8.1e-09 63.5 59 66.1
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 8.1e-09 63.5 78 65.4
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.1e-08 63.2 70 55.7
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.1e-08 63.2 79 51.9
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-08 62.8 63 60.3
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.4e-08 62.8 79 51.9
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-08 62.8 79 51.9
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.4e-08 62.8 79 51.9
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.4e-08 62.8 62 69.4
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-08 62.8 74 63.5
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-08 62.8 56 69.6
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.4e-08 62.8 69 63.8
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-08 62.4 56 71.4
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.4e-08 62.0 77 49.4
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.4e-08 62.0 93 43.0
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.4e-08 62.0 63 65.1
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 2.4e-08 62.0 77 59.7
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 2.4e-08 62.0 73 61.6
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.4e-08 62.0 74 55.4
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.1e-08 61.6 63 58.7
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 3.1e-08 61.6 79 53.2
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 3.1e-08 61.6 76 47.4
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 3.1e-08 61.6 75 61.3
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.1e-08 61.6 66 63.6
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 4.0e-08 61.2 67 50.7
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.0e-08 61.2 54 66.7
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.0e-08 61.2 79 50.6
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.0e-08 61.2 79 45.6
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.3e-08 60.8 77 61.0
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 5.3e-08 60.8 63 66.7
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 5.3e-08 60.8 59 64.4
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 6.9e-08 60.5 90 45.6
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.9e-08 60.5 75 56.0
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 6.9e-08 60.5 76 56.6
CiPaw.09G078200 Carya illinoinensis HOM05D002385 ORTHO05D002245 9.0e-08 60.1 58 67.2
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 9.0e-08 60.1 64 56.2
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 9.0e-08 60.1 91 42.9
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 9.0e-08 60.1 63 61.9
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.2e-07 59.7 60 61.7
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.2e-07 59.7 70 58.6
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.2e-07 59.7 79 55.7
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 1.5e-07 59.3 61 63.9
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 2.0e-07 58.9 56 62.5
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 2.0e-07 58.9 56 62.5
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 2.0e-07 58.9 55 67.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-07 58.9 55 67.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-07 58.9 55 67.3
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 71 62.0
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 2.0e-07 58.9 81 50.6
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 2.6e-07 58.5 56 64.3
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 2.6e-07 58.5 56 64.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-07 58.5 58 65.5
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.6e-07 58.5 67 59.7
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.6e-07 58.5 57 64.9
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 2.6e-07 58.5 49 71.4
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 2.6e-07 58.5 65 56.9
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 3.4e-07 58.2 63 58.7
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.4e-07 58.2 55 67.3
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 3.4e-07 58.2 80 50.0
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 3.4e-07 58.2 88 45.5
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 4.5e-07 57.8 70 51.4
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 4.5e-07 57.8 50 70.0
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 5.8e-07 57.4 55 61.8
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 5.8e-07 57.4 78 55.1
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 5.8e-07 57.4 49 61.2
Sabra16G0021300 Salix brachista HOM05D002385 ORTHO05D002245 5.8e-07 57.4 46 60.9
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 7.6e-07 57.0 66 54.5
Potri.015G120800 Populus trichocarpa HOM05D002385 ORTHO05D002245 7.6e-07 57.0 55 65.5
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 9.9e-07 56.6 83 53.0
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 9.9e-07 56.6 64 51.6
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.9e-07 56.6 55 65.5
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 9.9e-07 56.6 72 51.4
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 9.9e-07 56.6 81 55.6
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.3e-06 56.2 67 50.7
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.3e-06 56.2 82 54.9
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 1.3e-06 56.2 56 50.0
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.3e-06 56.2 81 50.6
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.7e-06 55.8 79 48.1
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.7e-06 55.8 54 50.0
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 1.7e-06 55.8 64 48.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.7e-06 55.8 78 52.6
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.7e-06 55.8 78 52.6
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 1.7e-06 55.8 46 60.9
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.2e-06 55.5 79 48.1
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 2.2e-06 55.5 80 52.5
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 2.2e-06 55.5 67 53.7
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.9e-06 55.1 79 50.6
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.9e-06 55.1 43 65.1
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.9e-06 55.1 57 54.4
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.9e-06 55.1 68 47.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 3.8e-06 54.7 79 48.1
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 3.8e-06 54.7 62 45.2
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 4.9e-06 54.3 76 47.4
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 4.9e-06 54.3 82 46.3
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 4.9e-06 54.3 82 50.0
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 8.4e-06 53.5 79 48.1
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 8.4e-06 53.5 62 62.9
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 8.4e-06 53.5 70 48.6


User provided reference genes

Program Settings