Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.9e-68 262.3 128 100.0
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.5e-17 91.7 79 64.6
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.0e-16 88.2 79 63.3
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.5e-15 85.9 77 61.0
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.5e-15 85.9 77 61.0
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 3.6e-14 82.0 78 57.7
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 8.0e-14 80.9 84 53.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.0e-13 80.5 74 58.1
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.4e-13 80.1 79 58.2
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 3.0e-13 79.0 83 55.4
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.0e-13 78.6 77 51.9
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 5.2e-13 78.2 73 58.9
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.5e-12 76.6 77 54.5
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.4e-12 75.5 93 47.3
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 4.4e-12 75.1 79 55.7
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.5e-12 74.3 76 51.3
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.3e-11 73.6 65 56.9
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 2.2e-11 72.8 80 50.0
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 2.2e-11 72.8 66 60.6
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.2e-11 72.8 78 56.4
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.8e-11 72.4 76 51.3
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.8e-11 72.4 86 46.5
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 3.7e-11 72.0 82 48.8
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 6.3e-11 71.2 91 47.3
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 6.3e-11 71.2 72 54.2
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 6.3e-11 71.2 72 54.2
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 8.3e-11 70.9 87 49.4
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 1.8e-10 69.7 72 54.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.4e-10 69.3 77 50.6
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 3.1e-10 68.9 75 52.0
Dinv05962 Davidia involucrata HOM05D014462 ORTHO05D018947 3.1e-10 68.9 101 45.5
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.1e-10 68.9 74 50.0
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.1e-10 68.9 72 51.4
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 4.1e-10 68.6 77 53.2
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 4.1e-10 68.6 65 56.9
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.1e-10 68.6 67 55.2
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.1e-10 68.6 70 54.3
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.4e-10 68.2 77 53.2
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 5.4e-10 68.2 54 55.6
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 5.4e-10 68.2 80 50.0
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 5.4e-10 68.2 77 53.2
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 7.0e-10 67.8 77 53.2
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 7.0e-10 67.8 77 53.2
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 7.0e-10 67.8 62 53.2
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 7.0e-10 67.8 77 53.2
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.0e-10 67.8 101 41.6
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 9.1e-10 67.4 77 46.8
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 9.1e-10 67.4 72 52.8
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.2e-09 67.0 80 52.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.2e-09 67.0 80 52.5
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.2e-09 67.0 77 51.9
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.0e-09 66.2 76 48.7
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.0e-09 66.2 78 52.6
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-09 66.2 77 50.6
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 2.7e-09 65.9 77 51.9
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 2.7e-09 65.9 77 51.9
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.7e-09 65.9 85 45.9
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.7e-09 65.9 71 50.7
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.7e-09 65.9 71 50.7
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.5e-09 65.5 55 60.0
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.5e-09 65.1 77 51.9
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 5.9e-09 64.7 81 48.1
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.0e-08 63.9 71 54.9
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 1.0e-08 63.9 71 53.5
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 1.0e-08 63.9 94 42.6
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.0e-08 63.9 66 53.0
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.3e-08 63.5 63 54.0
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 1.7e-08 63.2 66 54.5
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.7e-08 63.2 81 45.7
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 1.7e-08 63.2 87 40.2
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.2e-08 62.8 68 51.5
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.2e-08 62.8 68 55.9
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.2e-08 62.8 71 49.3
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.9e-08 62.4 74 50.0
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 2.9e-08 62.4 79 49.4
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 3.8e-08 62.0 61 54.1
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 3.8e-08 62.0 66 54.5
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 3.8e-08 62.0 61 49.2
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 5.0e-08 61.6 68 50.0
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.0e-08 61.6 54 55.6
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 5.0e-08 61.6 80 43.8
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 5.0e-08 61.6 76 48.7
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 5.0e-08 61.6 71 47.9
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.5e-08 61.2 74 44.6
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.5e-08 61.2 80 43.8
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 6.5e-08 61.2 78 46.2
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 6.5e-08 61.2 79 44.3
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 8.5e-08 60.8 89 43.8
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 8.5e-08 60.8 61 55.7
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 8.5e-08 60.8 77 51.9
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.1e-07 60.5 73 49.3
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.1e-07 60.5 64 50.0
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.1e-07 60.5 60 50.0
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-07 60.5 71 52.1
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-07 60.5 69 50.7
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 1.1e-07 60.5 55 50.9
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.5e-07 60.1 81 46.9
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-07 60.1 71 49.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-07 60.1 71 49.3
Medtr4g112890 Medicago truncatula HOM05D019240 ORTHO05D002245 1.5e-07 60.1 55 58.2
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-07 60.1 84 47.6
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.5e-07 60.1 59 54.2
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.5e-07 60.1 79 50.6
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 2.5e-07 59.3 94 42.6
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 2.5e-07 59.3 65 49.2
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.5e-07 59.3 114 40.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 2.5e-07 59.3 80 45.0
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 2.5e-07 59.3 80 45.0
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.5e-07 59.3 68 50.0
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 3.2e-07 58.9 83 49.4
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 3.2e-07 58.9 72 48.6
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 3.2e-07 58.9 115 36.5
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 3.2e-07 58.9 57 52.6
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 4.2e-07 58.5 74 44.6
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 4.2e-07 58.5 65 47.7
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 4.2e-07 58.5 108 39.8
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 5.5e-07 58.2 65 50.8
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 5.5e-07 58.2 83 42.2
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 5.5e-07 58.2 62 53.2
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.2e-07 57.8 68 52.9
CiPaw.15G117700 Carya illinoinensis HOM05D019240 ORTHO05D002245 7.2e-07 57.8 73 46.6
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 9.4e-07 57.4 77 42.9
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 9.4e-07 57.4 45 55.6
Glyma.05G017100 Glycine max HOM05D019240 ORTHO05D002245 9.4e-07 57.4 32 75.0
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 9.4e-07 57.4 49 55.1
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 9.4e-07 57.4 62 54.8
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 1.2e-06 57.0 63 47.6
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 1.2e-06 57.0 63 47.6
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.2e-06 57.0 58 53.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.2e-06 57.0 68 51.5
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.6e-06 56.6 76 44.7
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.6e-06 56.6 81 43.2
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.6e-06 56.6 62 53.2
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 2.1e-06 56.2 63 47.6
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 2.1e-06 56.2 49 57.1
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.7e-06 55.8 56 55.4
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 2.7e-06 55.8 56 55.4
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 2.7e-06 55.8 56 55.4
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-06 55.8 58 55.2
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.7e-06 55.8 58 51.7
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 2.7e-06 55.8 50 56.0
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.7e-06 55.8 66 51.5
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 3.6e-06 55.5 63 46.0
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.6e-06 55.5 63 47.6
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 3.6e-06 55.5 65 46.2
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.6e-06 55.5 71 45.1
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 3.6e-06 55.5 69 49.3
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.6e-06 55.5 81 45.7
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 4.7e-06 55.1 80 38.8
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.7e-06 55.1 96 45.8
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 4.7e-06 55.1 78 43.6
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 4.7e-06 55.1 81 49.4
Glyma.17G082900 Glycine max HOM05D019240 ORTHO05D031589 6.1e-06 54.7 77 46.8
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.1e-06 54.7 54 50.0
AL1G15140 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 8.0e-06 54.3 45 57.8
AT1G05340 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 8.0e-06 54.3 45 57.8
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 8.0e-06 54.3 78 44.9
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 8.0e-06 54.3 67 50.7
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 8.0e-06 54.3 65 49.2
Sp1g04210 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.0e-06 54.3 76 42.1


User provided reference genes

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