Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 4.5e-101 371.3 197 100.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.0e-80 302.8 200 81.0
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-77 293.5 195 77.9
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-76 290.4 203 75.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.1e-76 288.1 194 74.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 5.1e-76 288.1 195 76.4
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 8.6e-76 287.3 167 86.2
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.1e-75 287.0 200 74.5
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.9e-75 286.2 197 75.1
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.6e-75 284.6 194 74.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.1e-74 282.7 198 76.3
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.1e-74 282.7 197 74.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.1e-74 282.7 197 74.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.8e-74 282.3 197 73.6
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.1e-73 280.4 194 74.2
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.4e-73 280.0 204 74.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 3.1e-73 278.9 190 76.3
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 3.1e-73 278.9 193 74.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 5.2e-73 278.1 198 74.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.5e-72 276.6 184 75.0
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.6e-72 275.8 197 73.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.8e-72 274.6 171 81.9
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 5.8e-72 274.6 191 70.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.2e-71 272.7 200 72.5
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.2e-71 272.7 176 78.4
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.2e-71 272.7 199 71.9
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.9e-71 272.3 169 78.7
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.9e-71 271.6 181 75.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.4e-70 270.0 180 75.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.4e-70 270.0 190 71.6
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.9e-70 269.6 192 72.9
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-70 269.6 201 71.6
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.4e-70 269.2 196 70.9
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 3.2e-70 268.9 206 67.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.2e-70 268.5 182 74.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.2e-70 268.5 181 75.1
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.2e-70 268.5 150 86.7
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 5.4e-70 268.1 197 69.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 7.1e-70 267.7 180 73.3
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.1e-70 267.7 191 70.7
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 7.1e-70 267.7 197 72.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.1e-69 266.2 189 74.6
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.7e-69 265.8 161 80.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 4.6e-69 265.0 195 69.7
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 4.6e-69 265.0 189 74.6
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.3e-68 263.5 197 69.0
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 6.6e-68 261.2 197 70.6
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 6.6e-68 261.2 183 74.9
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 6.6e-68 261.2 183 74.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 8.7e-68 260.8 183 74.9
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 8.7e-68 260.8 183 74.9
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.1e-67 260.4 184 71.2
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.1e-67 260.4 180 72.8
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.5e-67 260.0 186 75.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-67 259.6 219 66.2
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.5e-67 259.2 190 68.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.3e-67 258.8 201 66.2
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.3e-67 258.8 202 66.3
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.3e-67 257.7 185 68.1
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 7.3e-67 257.7 180 73.9
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 9.6e-67 257.3 204 66.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 9.6e-67 257.3 204 66.7
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 9.6e-67 257.3 183 71.0
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 9.6e-67 257.3 199 69.3
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.6e-66 256.5 174 74.7
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.1e-66 256.1 197 68.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.1e-66 256.1 192 67.2
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 4.8e-66 255.0 182 67.6
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 6.2e-66 254.6 193 67.9
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 6.2e-66 254.6 186 71.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 6.2e-66 254.6 186 71.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.2e-66 254.6 190 72.1
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.1e-65 253.8 171 74.9
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 3.1e-65 252.3 164 77.4
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 3.1e-65 252.3 173 71.1
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.0e-65 251.9 189 65.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 4.0e-65 251.9 214 64.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 6.9e-65 251.1 189 66.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 6.9e-65 251.1 195 65.6
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.0e-65 250.8 191 67.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 9.0e-65 250.8 189 67.7
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 9.0e-65 250.8 190 67.9
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.5e-64 250.0 194 65.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.5e-64 250.0 186 70.4
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.6e-64 249.2 183 67.8
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.6e-64 249.2 184 69.6
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.6e-64 249.2 197 65.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 3.4e-64 248.8 177 71.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.9e-63 245.7 194 65.5
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 3.8e-63 245.4 206 64.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 3.8e-63 245.4 172 72.7
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.9e-63 245.0 182 70.3
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 8.4e-63 244.2 197 66.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 8.4e-63 244.2 186 69.4
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.9e-62 243.0 169 74.0
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.4e-62 242.7 198 65.7
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 5.4e-62 241.5 172 70.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 5.4e-62 241.5 178 71.9
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 7.1e-62 241.1 194 65.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.3e-62 240.7 182 67.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 9.3e-62 240.7 175 69.7
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.3e-62 240.7 197 65.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.6e-61 240.0 172 70.9
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.1e-61 239.6 180 71.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 3.5e-61 238.8 214 60.7
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 4.6e-61 238.4 180 70.6
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 6.0e-61 238.0 227 58.6
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.7e-60 236.5 203 61.1
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.6e-60 234.6 177 67.8
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.6e-60 234.6 167 72.5
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-59 233.4 166 69.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.5e-59 233.4 192 60.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 3.3e-59 232.3 197 66.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.6e-59 231.5 158 74.7
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.6e-59 231.5 158 74.7
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 7.3e-59 231.1 168 67.3
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.4e-57 226.9 189 64.6
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.9e-56 220.7 187 62.0
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.7e-55 219.9 167 66.5
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.8e-55 218.8 142 76.8
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.7e-53 212.6 185 63.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 6.7e-52 208.0 166 65.7
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 3.3e-51 205.7 221 55.2
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.7e-47 193.4 179 59.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.2e-47 193.0 163 60.1
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.8e-47 192.2 179 57.5
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.6e-45 186.8 156 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.6e-45 185.3 167 58.1
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.3e-44 183.0 169 55.0
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.5e-38 162.9 103 81.6
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.1e-37 158.3 168 50.6
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.3e-36 157.1 130 63.1
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.7e-36 154.8 169 49.1
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.1e-35 154.1 111 69.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.7e-35 151.8 101 76.2
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.8e-34 148.7 166 50.0
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.3e-34 148.3 125 60.8
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.4e-33 146.4 99 68.7
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.9e-33 144.8 84 77.4
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.5e-32 143.7 100 71.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 4.5e-32 142.1 139 54.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 4.5e-32 142.1 93 73.1
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 6.7e-28 128.3 99 63.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.5e-27 127.1 99 63.6
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 7.7e-24 114.8 85 69.4
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.1e-21 105.1 140 45.0
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-20 104.0 82 63.4
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.1e-17 94.4 88 56.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.9e-15 86.3 135 37.0
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 8.5e-15 84.7 63 71.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 5.5e-14 82.0 76 60.5
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.7e-11 71.2 78 53.8
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.8e-09 67.0 41 78.0
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 2.4e-09 66.6 46 71.7
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.1e-09 66.2 96 43.8
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 5.3e-09 65.5 66 51.5
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 3.8e-07 59.3 62 56.5
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 2.5e-06 56.6 62 54.8
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.2e-06 56.2 46 67.4


User provided reference genes

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