Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.3e-81 304.3 153 100.0
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-59 233.4 131 91.6
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.7e-56 220.7 138 80.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.8e-55 218.4 140 80.0
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.5e-54 215.7 139 78.4
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 5.5e-54 214.5 134 81.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 5.5e-54 214.5 139 78.4
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 5.5e-54 214.5 140 78.6
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.2e-53 213.4 138 78.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.6e-53 213.0 138 77.5
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.6e-53 211.8 129 82.2
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 3.6e-53 211.8 138 77.5
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 4.7e-53 211.5 129 80.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.0e-53 210.7 140 77.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-52 210.3 140 76.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-52 210.3 140 76.4
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-52 209.9 137 78.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.8e-52 209.5 140 76.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.8e-52 209.5 140 76.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.3e-52 209.1 138 75.4
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.3e-52 209.1 108 93.5
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.0e-52 208.8 140 77.9
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.0e-52 208.8 138 76.1
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.0e-52 208.4 138 76.1
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.2e-52 208.0 129 80.6
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.2e-52 208.0 129 80.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.2e-52 208.0 138 75.4
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 6.8e-52 207.6 129 79.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 8.8e-52 207.2 138 75.4
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 8.8e-52 207.2 137 76.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 8.8e-52 207.2 138 75.4
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.2e-51 206.8 129 79.8
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.2e-51 206.8 144 71.5
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.2e-51 206.8 140 75.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-51 205.7 138 74.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 4.4e-51 204.9 137 75.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.4e-51 204.9 138 74.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.5e-51 204.1 138 72.5
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 9.8e-51 203.8 137 74.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.3e-50 203.4 140 72.9
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.2e-50 202.6 129 77.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.2e-50 202.6 138 73.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.2e-50 202.6 138 72.5
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.8e-50 202.2 129 78.3
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.8e-50 202.2 139 74.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.3e-50 201.1 139 73.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.3e-50 201.1 138 73.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.1e-49 200.3 129 79.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.4e-49 199.9 137 74.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.8e-49 199.5 138 72.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.4e-49 199.1 138 71.0
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 3.1e-49 198.7 135 75.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.1e-49 198.4 137 71.5
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 5.4e-49 198.0 139 73.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 5.4e-49 198.0 138 71.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 5.4e-49 198.0 129 77.5
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 5.4e-49 198.0 129 77.5
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 7.0e-49 197.6 138 72.5
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 7.0e-49 197.6 139 72.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.0e-49 197.6 138 72.5
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 9.1e-49 197.2 138 73.2
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 9.1e-49 197.2 138 73.2
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 9.1e-49 197.2 140 73.6
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 9.1e-49 197.2 138 73.2
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.2e-48 196.8 138 73.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.2e-48 196.8 138 73.2
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-48 196.8 129 76.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.6e-48 196.4 138 72.5
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.6e-48 196.4 138 71.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.7e-48 195.7 137 70.8
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 7.7e-48 194.1 136 72.1
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 7.7e-48 194.1 138 71.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 7.7e-48 194.1 138 71.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 7.7e-48 194.1 138 71.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-47 193.7 138 69.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-47 193.4 137 69.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.3e-47 193.4 138 72.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-47 193.0 133 74.4
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.7e-47 193.0 138 71.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.2e-47 192.6 138 73.2
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.9e-47 192.2 126 76.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.8e-47 191.8 140 69.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.8e-47 191.8 133 72.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 5.0e-47 191.4 136 72.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.5e-47 191.0 137 69.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 8.5e-47 190.7 138 69.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.1e-46 190.3 138 70.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.1e-46 190.3 137 71.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.5e-46 189.9 138 71.0
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.5e-46 189.1 138 68.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.5e-46 189.1 128 72.7
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.2e-46 188.7 138 70.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.2e-46 188.3 139 69.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.5e-46 188.0 138 70.3
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 7.2e-46 187.6 136 71.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 7.2e-46 187.6 136 71.3
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.2e-45 186.8 137 68.6
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-45 186.4 137 67.2
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.1e-45 186.0 129 72.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.1e-45 186.0 137 68.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.1e-45 186.0 137 68.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 2.7e-45 185.7 135 69.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 4.7e-45 184.9 137 66.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 4.7e-45 184.9 138 67.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.7e-45 184.9 133 70.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.7e-45 184.9 133 69.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 6.1e-45 184.5 132 70.5
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-44 183.7 135 69.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-44 183.7 137 67.9
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-44 183.0 138 66.7
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.5e-43 179.9 138 65.2
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.0e-43 179.5 138 61.6
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-43 179.1 136 66.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.4e-43 178.3 127 70.1
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.4e-43 178.3 137 67.9
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 5.7e-43 177.9 129 72.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 9.8e-43 177.2 127 72.4
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.3e-42 176.8 132 68.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.3e-42 176.8 138 68.1
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-42 176.8 138 63.8
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.9e-42 174.9 123 71.5
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 6.3e-42 174.5 137 65.7
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.3e-42 174.5 135 66.7
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.3e-42 174.1 130 67.7
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.1e-41 173.7 130 68.5
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.4e-41 173.3 133 63.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-41 172.9 123 71.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-41 172.9 123 71.5
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.8e-41 172.9 139 63.3
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.4e-41 172.6 142 62.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.1e-41 171.8 123 70.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 4.1e-41 171.8 135 63.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.4e-41 171.4 131 65.6
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.6e-40 169.9 138 64.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.0e-40 169.5 138 61.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.7e-40 169.1 128 66.4
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.9e-40 167.9 139 61.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.9e-40 167.9 137 65.0
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.9e-39 165.6 138 60.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 6.6e-39 164.5 139 61.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.3e-38 162.2 117 70.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.3e-38 161.8 137 63.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 7.3e-38 161.0 137 64.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.4e-36 156.8 100 77.0
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.3e-36 156.0 130 63.8
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 4.0e-36 155.2 119 64.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.5e-35 153.3 100 77.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.0e-35 152.9 123 61.8
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 7.5e-35 151.0 130 58.5
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.9e-34 149.1 125 58.4
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.4e-33 146.7 90 80.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-32 143.7 127 58.3
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.8e-32 141.0 131 54.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 7.8e-32 141.0 136 55.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-31 140.6 99 72.7
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.9e-31 138.7 121 57.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.2e-29 133.7 136 55.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 8.0e-29 131.0 124 50.8
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.0e-28 130.6 137 53.3
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.4e-28 130.2 139 54.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.0e-28 128.6 126 56.3
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.5e-27 126.7 127 57.5
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.5e-27 124.4 145 51.7
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.7e-26 122.1 145 51.0
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.4e-26 121.3 135 51.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.7e-21 105.1 73 68.5
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.7e-18 95.5 121 42.1
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-16 90.1 65 70.8
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.1e-14 84.0 60 63.3
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.5e-14 82.8 121 41.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.5e-14 82.8 66 60.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.6e-14 81.6 79 57.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 9.5e-14 80.9 69 58.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.1e-13 79.7 58 69.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.9e-12 74.3 52 67.3
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 7.8e-08 61.2 64 48.4
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.3e-07 59.7 107 33.6


User provided reference genes

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