Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015576001 Vitis vinifera HOM05D003717 ORTHO05D004848 3.9e-84 314.7 153 100.0
GSVIVG01015579001 Vitis vinifera HOM05D003717 ORTHO05D004848 9.8e-51 203.8 111 86.5
CiPaw.03G247500 Carya illinoinensis HOM05D003717 ORTHO05D004848 8.3e-50 200.7 109 86.2
Ciclev10007683m.g Citrus clementina HOM05D003717 ORTHO05D004848 8.3e-50 200.7 108 87.0
COL.COLO4_35140 Corchorus olitorius HOM05D003717 ORTHO05D004848 2.4e-49 199.1 108 85.2
Thecc.09G130900 Theobroma cacao HOM05D003717 ORTHO05D004848 2.4e-49 199.1 111 83.8
THA.LOC104826549 Tarenaya hassleriana HOM05D003717 ORTHO05D004848 3.1e-49 198.7 111 82.9
CARHR265580 Cardamine hirsuta HOM05D003717 ORTHO05D004848 4.1e-49 198.4 111 82.0
BcaB08g35617 Brassica carinata HOM05D003717 ORTHO05D004848 1.2e-48 196.8 111 82.0
CANSAT11G0921 Cannabis sativa HOM05D003717 ORTHO05D004848 3.5e-48 195.3 109 83.5
Duzib187G1288 Durio zibethinus HOM05D003717 ORTHO05D004848 4.5e-48 194.9 111 82.0
Actinidia26376 Actinidia chinensis HOM05D003717 ORTHO05D004848 5.9e-48 194.5 111 81.1
Atru.chr7.1107 Acer truncatum HOM05D003717 ORTHO05D004848 7.7e-48 194.1 108 83.3
CiPaw.04G174300 Carya illinoinensis HOM05D003717 ORTHO05D004848 1.0e-47 193.7 108 83.3
Cpa.g.sc46.33 Carica papaya HOM05D003717 ORTHO05D004848 1.7e-47 193.0 111 82.9
Dinv36487 Davidia involucrata HOM05D003717 ORTHO05D004848 1.7e-47 193.0 111 81.1
TAR636G2912 Trochodendron aralioides HOM05D003717 ORTHO05D004848 2.2e-47 192.6 109 80.7
AL8G27060 Arabidopsis lyrata HOM05D003717 ORTHO05D004848 2.9e-47 192.2 151 64.2
QL02p089699 Quercus lobata HOM05D003717 ORTHO05D004848 2.9e-47 192.2 110 82.7
Duzib168G1487 Durio zibethinus HOM05D003717 ORTHO05D004848 3.8e-47 191.8 108 84.3
Oeu055968.1 Olea europaea HOM05D003717 ORTHO05D004848 3.8e-47 191.8 113 79.6
Sed0027813 Sechium edule HOM05D003717 ORTHO05D004848 3.8e-47 191.8 111 79.3
DCAR_009320 Daucus carota HOM05D003717 ORTHO05D004848 5.0e-47 191.4 108 82.4
SGA_v2.0_scaffold229G43305 Striga asiatica HOM05D003717 ORTHO05D004848 5.0e-47 191.4 111 81.1
Haze_25523 Corylus avellana HOM05D003717 ORTHO05D004848 6.5e-47 191.0 108 82.4
Thhalv10012867m.g Eutrema salsugineum HOM05D003717 ORTHO05D004848 6.5e-47 191.0 111 80.2
Sp6g14780 Schrenkiella parvula HOM05D003717 ORTHO05D004848 8.5e-47 190.7 111 79.3
Eucgr.C01375 Eucalyptus grandis HOM05D003717 ORTHO05D004848 1.1e-46 190.3 111 81.1
Gohir.D06G053000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 1.1e-46 190.3 108 82.4
Gorai.010G061900 Gossypium raimondii HOM05D003717 ORTHO05D004848 1.1e-46 190.3 108 82.4
TWI32G0090 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 1.5e-46 189.9 148 66.2
Cc06_g08140 Coffea canephora HOM05D003717 ORTHO05D004848 1.9e-46 189.5 105 82.9
TAR625G0037 Trochodendron aralioides HOM05D003717 ORTHO05D004848 1.9e-46 189.5 109 79.8
PGR142G2827 Punica granatum HOM05D003717 ORTHO05D004848 2.5e-46 189.1 108 82.4
MD02G1027400 Malus domestica HOM05D003717 ORTHO05D004848 4.2e-46 188.3 113 78.8
CSS0041787 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 7.2e-46 187.6 111 79.3
Sabra18G0108200 Salix brachista HOM05D003717 ORTHO05D004848 7.2e-46 187.6 113 78.8
Actinidia21963 Actinidia chinensis HOM05D003717 ORTHO05D004848 9.4e-46 187.2 111 77.5
AT5G52580 Arabidopsis thaliana HOM05D003717 ORTHO05D004848 9.4e-46 187.2 111 78.4
Cfa003414 Carpinus fangiana HOM05D003717 ORTHO05D004848 9.4e-46 187.2 108 80.6
ECA240G3427 Erigeron canadensis HOM05D003717 ORTHO05D004848 9.4e-46 187.2 108 79.6
Phvul.003G167800 Phaseolus vulgaris HOM05D003717 ORTHO05D004848 9.4e-46 187.2 111 79.3
RcHm_v2.0_Chr2g0087771 Rosa chinensis HOM05D003717 ORTHO05D004848 1.2e-45 186.8 113 77.0
ClCG11G003270 Citrullus lanatus HOM05D003717 ORTHO05D004848 1.6e-45 186.4 111 76.6
FvH4_1g02680 Fragaria vesca HOM05D003717 ORTHO05D004848 1.6e-45 186.4 113 77.9
FAN19G0930 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.6e-45 186.4 113 77.9
FAN23G0973 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.6e-45 186.4 113 77.9
FAN26G2736 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.6e-45 186.4 113 77.9
FAN28G2297 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.6e-45 186.4 113 77.9
Lj7A427G45 Lonicera japonica HOM05D003717 ORTHO05D004848 1.6e-45 186.4 116 75.0
TWI63G0928 Tripterygium wilfordii HOM05D003717 ORTHO05D004848 2.1e-45 186.0 151 63.6
Sabra06G0049200 Salix brachista HOM05D003717 ORTHO05D004848 2.7e-45 185.7 113 79.6
Carub.0008s1272 Capsella rubella HOM05D003717 ORTHO05D004848 3.6e-45 185.3 151 63.6
Migut.J01218 Erythranthe guttata HOM05D003717 ORTHO05D004848 3.6e-45 185.3 108 78.7
Gohir.D08G258900 Gossypium hirsutum HOM05D003717 ORTHO05D004848 3.6e-45 185.3 111 78.4
Potri.006G066300 Populus trichocarpa HOM05D003717 ORTHO05D004848 3.6e-45 185.3 113 79.6
BNapus_Darmor_BZH_scaffold_232p00030 Brassica napus HOM05D003717 ORTHO05D004848 4.7e-45 184.9 111 77.5
MELO3C004462.2 Cucumis melo HOM05D003717 ORTHO05D004848 6.1e-45 184.5 111 75.7
HanXRQChr09g0243961 Helianthus annuus HOM05D003717 ORTHO05D004848 6.1e-45 184.5 108 78.7
BraA02t06235Z Brassica rapa HOM05D003717 ORTHO05D004848 8.0e-45 184.1 111 77.5
CsaV3_2G003070 Cucumis sativus L. HOM05D003717 ORTHO05D004848 8.0e-45 184.1 111 75.7
MSTRG.6072 Avicennia marina HOM05D003717 ORTHO05D004848 1.0e-44 183.7 108 78.7
Gorai.004G276400 Gossypium raimondii HOM05D003717 ORTHO05D004848 1.0e-44 183.7 111 76.6
Manes.06G048400 Manihot esculenta HOM05D003717 ORTHO05D004848 1.0e-44 183.7 110 79.1
BolC2t08086H Brassica oleracea HOM05D003717 ORTHO05D004848 1.4e-44 183.3 111 77.5
CAN.G551.81 Capsicum annuum HOM05D003717 ORTHO05D004848 1.8e-44 183.0 129 69.0
BcaC03g14516 Brassica carinata HOM05D003717 ORTHO05D004848 2.3e-44 182.6 111 76.6
Gohir.A08G238200 Gossypium hirsutum HOM05D003717 ORTHO05D004848 3.0e-44 182.2 132 67.4
Manes.14G115300 Manihot esculenta HOM05D003717 ORTHO05D004848 4.0e-44 181.8 113 77.0
Nn2g12095 Nelumbo nucifera HOM05D003717 ORTHO05D004848 4.0e-44 181.8 109 78.9
Potri.018G127500 Populus trichocarpa HOM05D003717 ORTHO05D004848 4.0e-44 181.8 110 78.2
FvH4_7g25820 Fragaria vesca HOM05D003717 ORTHO05D004848 5.2e-44 181.4 113 76.1
Glyma.17G112200 Glycine max HOM05D003717 ORTHO05D004848 5.2e-44 181.4 113 77.9
A02p11700 Brassica napus HOM05D003717 ORTHO05D004848 6.8e-44 181.0 111 75.7
FAN06G0971 Fragaria x ananassa HOM05D003717 ORTHO05D004848 6.8e-44 181.0 113 76.1
Lsat_1_v5_gn_7_44181 Lactuca sativa HOM05D003717 ORTHO05D004848 6.8e-44 181.0 105 77.1
Lj4g0002653 Lotus japonicus HOM05D003717 ORTHO05D004848 6.8e-44 181.0 108 77.8
Glyma.13G159100 Glycine max HOM05D003717 ORTHO05D004848 8.8e-44 180.6 113 76.1
Gohir.A06G054000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 8.8e-44 180.6 108 78.7
Rhsim01G0064300 Rhododendron simsii HOM05D003717 ORTHO05D004848 8.8e-44 180.6 128 66.4
TPR.G26469 Trifolium pratense HOM05D003717 ORTHO05D004848 8.8e-44 180.6 108 77.8
Nitab4.5_0001349g0040 Nicotiana tabacum HOM05D003717 ORTHO05D004848 1.2e-43 180.3 105 79.0
Ca_06936_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 1.5e-43 179.9 108 75.9
Ca_30465_v3 Cicer arietinum L. HOM05D003717 ORTHO05D004848 1.5e-43 179.9 108 75.9
Prupe.7G247700 Prunus persica HOM05D003717 ORTHO05D004848 1.5e-43 179.9 115 76.5
VMungo1215G1390 Vigna mungo HOM05D003717 ORTHO05D004848 1.5e-43 179.9 111 76.6
Aqoxy7G03655 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 2.6e-43 179.1 108 76.9
SalBow6G6762 Salvia bowleyana HOM05D003717 ORTHO05D004848 4.4e-43 178.3 105 78.1
Lalb_Chr12g0198081 Lupinus albus HOM05D003717 ORTHO05D004848 7.5e-43 177.6 108 75.0
Psat4g040040 Pisum sativum HOM05D003717 ORTHO05D004848 7.5e-43 177.6 108 76.9
MD15G1168800 Malus domestica HOM05D003717 ORTHO05D004848 9.8e-43 177.2 113 75.2
Nitab4.5_0006319g0050 Nicotiana tabacum HOM05D003717 ORTHO05D004848 9.8e-43 177.2 105 78.1
Solyc12g009610.2 Solanum lycopersicum HOM05D003717 ORTHO05D004848 9.8e-43 177.2 108 75.9
Sopen12g004600 Solanum pennellii HOM05D003717 ORTHO05D004848 9.8e-43 177.2 108 75.9
FAN10G3828 Fragaria x ananassa HOM05D003717 ORTHO05D004848 1.3e-42 176.8 104 78.8
vmacro06150 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 1.7e-42 176.4 106 78.3
vmacro07715 Vaccinium macrocarpon HOM05D003717 ORTHO05D004848 2.2e-42 176.0 105 75.2
CAN.G778.1 Capsicum annuum HOM05D003717 ORTHO05D004848 3.7e-42 175.3 112 72.3
Lalb_Chr07g0179131 Lupinus albus HOM05D003717 ORTHO05D004848 3.7e-42 175.3 109 75.2
arahy.Tifrunner.gnm1.ann1.QEV4QV Arachis hypogaea HOM05D003717 ORTHO05D004848 4.9e-42 174.9 108 75.9
Medtr4g115090 Medicago truncatula HOM05D003717 ORTHO05D004848 4.9e-42 174.9 108 75.9
MBI15_g08165_MAGBIO Magnolia biondii HOM05D003717 ORTHO05D004848 1.1e-41 173.7 105 75.2
arahy.Tifrunner.gnm1.ann1.ZHFU2E Arachis hypogaea HOM05D003717 ORTHO05D004848 1.8e-41 172.9 108 75.0
Sed0019028 Sechium edule HOM05D003717 ORTHO05D004848 1.8e-41 172.9 111 72.1
Sopen07g003880 Solanum pennellii HOM05D003717 ORTHO05D004848 1.8e-41 172.9 108 73.1
AUR62011169 Chenopodium quinoa HOM05D003717 ORTHO05D004848 3.1e-41 172.2 115 72.2
unitig_60.g25513 Utricularia gibba HOM05D003717 ORTHO05D004848 4.1e-41 171.8 129 65.9
HanXRQChr03g0063211 Helianthus annuus HOM05D003717 ORTHO05D004848 5.4e-41 171.4 108 74.1
Peaxi162Scf00088g01619 Petunia axillaris HOM05D003717 ORTHO05D004848 9.2e-41 170.6 106 74.5
AUR62013315 Chenopodium quinoa HOM05D003717 ORTHO05D004848 1.6e-40 169.9 109 73.4
EL10Ac8g18710 Beta vulgaris HOM05D003717 ORTHO05D004848 2.7e-40 169.1 106 75.5
Gohir.D05G016000 Gossypium hirsutum HOM05D003717 ORTHO05D004848 3.5e-40 168.7 108 70.4
Gorai.009G016100 Gossypium raimondii HOM05D003717 ORTHO05D004848 3.5e-40 168.7 108 70.4
Ah.14g079420 Amaranthus hybridus HOM05D003717 ORTHO05D004848 4.5e-40 168.3 109 74.3
HanXRQChr03g0060941 Helianthus annuus HOM05D003717 ORTHO05D004848 5.9e-40 167.9 105 75.2
Sc14g0000170 Simmondsia chinensis HOM05D003717 ORTHO05D004848 1.0e-39 167.2 112 70.5
Hund26546 Selenicereus undatus HOM05D003717 ORTHO05D004848 1.3e-39 166.8 152 57.2
PSO210G0578 Papaver somniferum HOM05D003717 ORTHO05D004848 1.7e-39 166.4 109 73.4
Gohir.A05G014800 Gossypium hirsutum HOM05D003717 ORTHO05D004848 2.3e-39 166.0 108 68.5
Lsat_1_v5_gn_8_62521 Lactuca sativa HOM05D003717 ORTHO05D004848 2.3e-39 166.0 118 62.7
HPP92_010889 Vanilla planifolia HOM05D003717 ORTHO05D004848 2.9e-39 165.6 111 70.3
Nitab4.5_0012287g0010 Nicotiana tabacum HOM05D003717 ORTHO05D004848 8.6e-39 164.1 105 73.3
PSO210G7704 Papaver somniferum HOM05D003717 ORTHO05D004848 8.6e-39 164.1 108 73.1
Aqoxy7G02295 Aquilegia oxysepala HOM05D003717 ORTHO05D004848 9.5e-38 160.6 101 74.3
PGSC0003DMG402030895 Solanum tuberosum HOM05D003717 ORTHO05D004848 9.5e-38 160.6 98 75.5
SHI28847 Sapria himalayana HOM05D003717 ORTHO05D004848 2.3e-36 156.0 134 61.9
SEGI_13709 Sequoiadendron giganteum HOM05D003717 ORTHO05D004848 2.3e-36 156.0 118 63.6
ATR0724G026 Amborella trichopoda HOM05D003717 ORTHO05D004848 5.2e-36 154.8 121 63.6
Os02g0709800 Oryza sativa ssp. japonica HOM05D003717 ORTHO05D004848 5.2e-36 154.8 112 65.2
Hund09277 Selenicereus undatus HOM05D003717 ORTHO05D004848 1.4e-33 146.7 105 62.9
Pp3c20_14740 Physcomitrium patens HOM05D003717 ORTHO05D004848 5.4e-33 144.8 97 67.0
CSS0038528 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 7.0e-33 144.4 92 73.9
CDE06G1365 Ceratophyllum demersum HOM05D003717 ORTHO05D004848 1.2e-32 143.7 118 59.3
RcHm_v2.0_Chr7g0194011 Rosa chinensis HOM05D003717 ORTHO05D004848 1.0e-31 140.6 91 71.4
Lsat_1_v5_gn_5_91980 Lactuca sativa HOM05D003717 ORTHO05D004848 1.7e-31 139.8 112 59.8
Mapoly0045s0037 Marchantia polymorpha HOM05D003717 ORTHO05D004848 3.0e-31 139.0 95 66.3
AagrBONN_evm.TU.Sc2ySwM_369.444 Anthoceros agrestis HOM05D003717 ORTHO05D004848 1.1e-30 137.1 94 67.0
CBR_g5611 Chara braunii HOM05D003717 ORTHO05D004848 2.0e-27 126.3 98 61.2
SMO137G0381 Selaginella moellendorffii HOM05D003717 ORTHO05D004848 1.3e-26 123.6 100 58.0
DCAR_014898 Daucus carota HOM05D003717 ORTHO05D004848 1.4e-25 120.2 76 76.3
QL12p005271 Quercus lobata HOM05D003717 ORTHO05D004848 4.6e-24 115.2 104 59.6
CSS0040306 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 1.0e-23 114.0 69 78.3
COL.COLO4_13247 Corchorus olitorius HOM05D003717 ORTHO05D004848 3.0e-23 112.5 62 82.3
Peaxi162Scf00313g00819 Petunia axillaris HOM05D003717 ORTHO05D004848 3.0e-23 112.5 66 78.8
CSS0028261 Camellia sinensis var. sinensis HOM05D003717 ORTHO05D004848 2.1e-21 106.3 92 57.6
Cfa023432 Carpinus fangiana HOM05D002836 ORTHO05D003107 2.8e-13 79.3 75 49.3
PRCOL_00001840 Prasinoderma coloniale HOM05D003717 ORTHO05D004848 5.4e-09 65.1 135 31.9
Cre12.g537750 Chlamydomonas reinhardtii HOM05D003717 ORTHO05D004848 9.2e-09 64.3 83 37.3
CAN.G672.6 Capsicum annuum HOM05D000185 ORTHO05D000105 8.6e-07 57.8 34 73.5


User provided reference genes

Program Settings