Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 2.6e-39 164.9 78 100.0
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.4e-21 105.9 78 64.1
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 2.4e-21 105.1 78 64.1
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 9.1e-21 103.2 74 66.2
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.6e-20 102.4 80 58.8
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 2.0e-20 102.1 78 61.5
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.0e-20 102.1 80 60.0
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 2.7e-20 101.7 78 64.1
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 2.7e-20 101.7 71 66.2
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.5e-20 101.3 77 64.9
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 3.5e-20 101.3 71 66.2
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 3.5e-20 101.3 80 58.8
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 4.5e-20 100.9 74 63.5
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 4.5e-20 100.9 63 69.8
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 5.9e-20 100.5 63 71.4
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 5.9e-20 100.5 76 60.5
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 5.9e-20 100.5 78 65.4
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 5.9e-20 100.5 78 61.5
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.0e-19 99.8 60 76.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.3e-19 99.4 78 64.1
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.3e-19 99.4 78 60.3
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.7e-19 99.0 78 61.5
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.7e-19 99.0 78 61.5
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 2.3e-19 98.6 63 66.7
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 3.8e-19 97.8 78 62.8
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 5.0e-19 97.4 64 68.8
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 5.0e-19 97.4 78 60.3
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 6.6e-19 97.1 76 59.2
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 8.6e-19 96.7 78 59.0
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.1e-18 96.3 78 62.8
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.1e-18 96.3 78 62.8
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.5e-18 95.9 65 64.6
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 1.9e-18 95.5 75 58.7
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.9e-18 95.5 63 66.7
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 2.5e-18 95.1 78 59.0
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 3.3e-18 94.7 60 68.3
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 5.5e-18 94.0 63 68.3
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 7.2e-18 93.6 77 61.0
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 9.5e-18 93.2 78 60.3
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 1.2e-17 92.8 78 60.3
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 1.6e-17 92.4 78 60.3
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.6e-17 92.4 72 62.5
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.1e-17 92.0 66 62.1
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 2.8e-17 91.7 66 62.1
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 2.8e-17 91.7 63 63.5
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 4.7e-17 90.9 76 55.3
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 6.1e-17 90.5 69 60.9
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 8.0e-17 90.1 74 56.8
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 8.0e-17 90.1 68 61.8
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 8.0e-17 90.1 53 77.4
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.8e-16 89.0 74 58.1
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.8e-16 89.0 72 59.7
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 3.0e-16 88.2 61 67.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 4.0e-16 87.8 65 61.5
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 5.2e-16 87.4 72 59.7
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 5.2e-16 87.4 53 73.6
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.2e-15 86.3 76 57.9
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.2e-15 86.3 68 61.8
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.0e-15 85.5 68 61.8
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 2.6e-15 85.1 71 60.6
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 2.6e-15 85.1 72 58.3
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 4.4e-15 84.3 69 62.3
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 4.4e-15 84.3 69 62.3
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 4.4e-15 84.3 72 59.7
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 5.7e-15 84.0 64 60.9
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 5.7e-15 84.0 64 60.9
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 7.5e-15 83.6 53 67.9
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 7.5e-15 83.6 53 67.9
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 9.8e-15 83.2 75 54.7
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.3e-14 82.8 67 64.2
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.3e-14 82.8 63 60.3
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.7e-14 82.4 68 61.8
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.7e-14 82.4 53 67.9
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.7e-14 82.4 60 61.7
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.2e-14 82.0 70 61.4
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.2e-14 82.0 58 63.8
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 2.2e-14 82.0 68 55.9
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-14 80.9 68 57.4
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-14 80.9 68 57.4
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 4.9e-14 80.9 56 67.9
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 4.9e-14 80.9 71 56.3
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 6.3e-14 80.5 72 58.3
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 8.3e-14 80.1 74 56.8
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.3e-14 80.1 67 59.7
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.3e-14 80.1 67 59.7
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.3e-14 80.1 67 59.7
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 1.1e-13 79.7 67 59.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.1e-13 79.7 76 52.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.4e-13 79.3 71 57.7
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 2.4e-13 78.6 60 65.0
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 3.2e-13 78.2 65 60.0
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 7.0e-13 77.0 53 66.0
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 9.2e-13 76.6 51 66.7
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.2e-12 76.3 65 55.4
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.0e-12 75.5 53 64.2
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 2.0e-12 75.5 67 55.2
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 2.0e-12 75.5 65 60.0
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.7e-11 72.4 42 78.6
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 2.9e-11 71.6 90 46.7
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.1e-10 69.7 56 58.9
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 1.2e-09 66.2 45 68.9
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 3.7e-06 54.7 38 68.4


User provided reference genes

Program Settings