Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 0.0e+00 2919.4 1505 100.0
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 2635.5 1504 90.1
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 0.0e+00 2632.8 1505 90.1
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 2617.0 1504 89.2
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 2607.0 1512 89.2
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 2607.0 1512 89.2
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 2607.0 1504 89.1
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 0.0e+00 2604.7 1522 88.4
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 0.0e+00 2603.9 1504 89.0
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2599.3 1504 88.8
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 2599.3 1505 88.8
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2596.6 1504 88.8
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2595.1 1504 88.6
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 2589.7 1505 88.4
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2588.9 1504 88.4
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 0.0e+00 2581.6 1505 89.1
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 0.0e+00 2578.9 1522 87.8
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 2574.3 1504 88.2
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 0.0e+00 2567.7 1519 87.2
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 0.0e+00 2562.3 1505 88.2
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 0.0e+00 2559.6 1504 88.0
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 0.0e+00 2557.7 1506 87.8
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 2556.9 1506 87.7
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 0.0e+00 2553.5 1504 87.4
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 0.0e+00 2548.9 1504 87.6
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 2546.2 1505 87.4
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2543.1 1502 87.3
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 0.0e+00 2539.6 1486 87.8
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 0.0e+00 2538.1 1504 86.8
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2535.0 1505 87.1
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 0.0e+00 2534.2 1512 86.8
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 0.0e+00 2531.1 1498 86.6
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2530.4 1505 87.0
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 0.0e+00 2521.5 1505 85.5
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 2516.5 1530 84.8
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 0.0e+00 2510.7 1504 85.4
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 2510.7 1510 85.8
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 0.0e+00 2509.9 1504 86.4
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 2507.2 1505 85.5
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 0.0e+00 2503.8 1517 85.2
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 0.0e+00 2503.0 1544 84.1
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 2498.4 1505 85.4
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 2497.6 1502 85.8
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2496.8 1458 87.9
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 0.0e+00 2492.6 1513 84.8
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 2491.5 1502 85.0
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 0.0e+00 2490.3 1504 85.6
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 2488.4 1505 85.4
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 0.0e+00 2486.1 1506 85.1
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 0.0e+00 2484.9 1515 85.4
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 2479.5 1527 83.8
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 0.0e+00 2478.7 1540 83.5
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 0.0e+00 2477.2 1503 85.6
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 0.0e+00 2477.2 1506 84.9
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 0.0e+00 2473.4 1504 84.6
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 0.0e+00 2472.2 1504 84.4
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 0.0e+00 2469.1 1504 84.4
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 0.0e+00 2468.7 1504 84.3
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 0.0e+00 2468.3 1497 85.2
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 0.0e+00 2463.7 1504 84.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 0.0e+00 2459.1 1521 83.9
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 2457.2 1505 84.3
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 0.0e+00 2455.2 1482 85.7
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 2442.2 1505 84.2
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2440.2 1505 84.1
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2437.5 1505 83.1
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 2418.7 1505 82.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 2405.2 1552 80.2
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 0.0e+00 2404.0 1507 82.4
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 0.0e+00 2402.5 1504 82.6
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 2397.9 1501 82.1
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 0.0e+00 2397.1 1502 82.3
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 0.0e+00 2395.9 1522 82.8
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 0.0e+00 2394.8 1496 82.8
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 0.0e+00 2384.4 1509 82.0
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 0.0e+00 2382.4 1495 81.7
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 0.0e+00 2380.5 1493 82.4
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 0.0e+00 2373.6 1539 80.6
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2372.8 1505 82.5
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 2371.3 1510 81.0
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 0.0e+00 2367.0 1503 81.8
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 0.0e+00 2362.4 1502 82.0
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 0.0e+00 2360.9 1494 82.2
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 0.0e+00 2357.0 1417 85.3
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 0.0e+00 2335.1 1485 81.3
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 0.0e+00 2334.3 1489 80.9
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 0.0e+00 2333.5 1485 81.0
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 0.0e+00 2325.4 1489 80.6
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 0.0e+00 2322.7 1489 80.3
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 0.0e+00 2318.5 1486 80.8
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 0.0e+00 2313.9 1490 80.2
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 2312.7 1490 80.1
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 2305.0 1485 80.3
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 0.0e+00 2298.9 1498 79.7
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 0.0e+00 2293.1 1511 78.2
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 0.0e+00 2286.1 1538 77.6
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 0.0e+00 2248.8 1506 77.4
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 0.0e+00 2209.9 1462 78.6
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 0.0e+00 2093.2 1503 74.2
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 0.0e+00 2088.5 1496 72.6
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 0.0e+00 2062.0 1521 70.9
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 0.0e+00 2040.4 1490 70.9
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 0.0e+00 2032.7 1374 78.4
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 2004.9 1527 68.3
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 1954.1 1519 67.1
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 0.0e+00 1938.7 1111 89.1
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 0.0e+00 1689.1 1321 69.4
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 0.0e+00 1646.7 1407 65.2
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 0.0e+00 1620.1 1097 80.0
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 0.0e+00 1588.9 1569 56.8
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1564.7 996 82.5
Nitab4.5_0002116g0030 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1424.5 908 82.7
CDE07G0361 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 0.0e+00 1271.1 923 72.5
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 0.0e+00 1268.1 803 83.2
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 0.0e+00 1078.2 713 79.2
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 6.5e-264 915.2 506 89.9
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 1.9e-263 913.7 506 89.5
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 4.8e-259 899.0 506 87.9
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 1.0e-253 881.3 583 77.7
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 2.3e-200 704.1 1612 33.4
CDE07G1594 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.3e-195 688.3 386 87.3
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 7.5e-188 662.5 1693 31.2
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 3.1e-181 640.6 374 89.3
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 4.0e-165 587.0 341 88.6
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.9e-154 551.6 417 68.1
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 4.2e-154 550.4 295 92.2
arahy.Tifrunner.gnm1.ann1.GFGC5E Arachis hypogaea HOM05D003720 ORTHO05D005312 2.6e-140 504.6 384 70.1
arahy.Tifrunner.gnm1.ann1.NRTP45 Arachis hypogaea HOM05D003720 ORTHO05D005312 5.0e-139 500.4 384 69.8
arahy.Tifrunner.gnm1.ann1.HL09EZ Arachis hypogaea HOM05D003720 ORTHO05D005312 5.7e-135 486.9 341 74.2
arahy.Tifrunner.gnm1.ann1.CMVH84 Arachis hypogaea HOM05D003720 ORTHO05D005312 2.4e-101 375.2 260 73.8
arahy.Tifrunner.gnm1.ann1.H6EN9A Arachis hypogaea HOM05D003720 ORTHO05D005312 1.5e-95 355.9 322 63.7
MBI09_g30143_MAGBIO Magnolia biondii HOM05D003720 ORTHO05D005312 2.0e-95 355.5 215 83.7
arahy.Tifrunner.gnm1.ann1.UX9YIA Arachis hypogaea HOM05D003720 ORTHO05D005312 2.8e-89 335.1 485 46.8
FAN23G1240 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.5e-87 329.3 234 75.6
arahy.Tifrunner.gnm1.ann1.QKW76S Arachis hypogaea HOM05D003720 ORTHO05D005312 1.4e-85 322.8 174 90.8
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.5e-79 302.8 164 90.2
Cpa.g.sc23.154 Carica papaya HOM05D003720 ORTHO05D005312 1.3e-78 299.7 164 90.2
arahy.Tifrunner.gnm1.ann1.XZYA5I Arachis hypogaea HOM05D003720 ORTHO05D005312 1.1e-77 296.6 203 74.9
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 2.9e-70 271.9 166 77.7
CDE07G0366 Ceratophyllum demersum HOM05D003720 ORTHO05D017820 2.3e-67 262.3 145 89.7
arahy.Tifrunner.gnm1.ann1.JURE59 Arachis hypogaea HOM05D003720 ORTHO05D005312 6.4e-54 217.6 119 91.6
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 3.4e-39 168.7 105 78.1
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 2.4e-32 146.0 90 78.9
unitig_22.g6633 Utricularia gibba HOM05D003720 ORTHO05D017820 5.8e-31 141.4 90 76.7
Actinidia27749 Actinidia chinensis HOM05D003720 ORTHO05D053439 3.7e-25 122.1 176 46.0
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 1.9e-21 109.8 69 81.2
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 3.0e-19 102.4 226 29.2
Dinv41561 Davidia involucrata HOM05D003720 ORTHO05D017820 7.4e-18 97.8 75 62.7
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 7.4e-18 97.8 241 31.1
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 4.5e-15 88.6 244 29.1
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 5.0e-14 85.1 221 29.9
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 4.2e-13 82.0 222 27.9
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 5.5e-13 81.6 232 25.4
Pp3c3_6660 Physcomitrium patens HOM05D003720 ORTHO05D005312 3.6e-12 79.0 66 60.6
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 1.4e-11 77.0 235 26.4
FvH4_5g24770 Fragaria vesca HOM05D067251 ORTHO05D017820 1.8e-11 76.6 91 51.6
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 4.4e-10 72.0 244 25.8
Lsat_1_v5_gn_7_20540 Lactuca sativa HOM05D003720 ORTHO05D007744 1.7e-09 70.1 43 86.0
Lsat_1_v5_gn_1_94860 Lactuca sativa HOM05D003720 ORTHO05D017820 2.8e-09 69.3 46 82.6
GSVIVG01034717001 Vitis vinifera HOM05D000251 ORTHO05D000414 2.8e-09 69.3 49 75.5
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 1.4e-08 67.0 223 23.8
Pp3c3_6650 Physcomitrium patens HOM05D003720 ORTHO05D318947 5.9e-07 61.6 81 43.2


User provided reference genes

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