Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015430001 Vitis vinifera HOM05D005850 ORTHO05D036566 5.8e-25 116.7 57 100.0
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 3.8e-16 87.4 55 83.6
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 1.1e-10 69.3 55 65.5
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 1.1e-10 69.3 54 64.8
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.8e-10 68.6 55 65.5
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 4.1e-10 67.4 53 71.7
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 5.3e-10 67.0 51 66.7
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 6.9e-10 66.6 51 66.7
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 6.9e-10 66.6 51 66.7
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 1.2e-09 65.9 55 63.6
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 1.2e-09 65.9 55 61.8
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.5e-09 65.5 55 60.0
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 1.5e-09 65.5 55 63.6
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 1.5e-09 65.5 55 63.6
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 2.0e-09 65.1 48 68.8
Haze_25682 Corylus avellana HOM05D005850 ORTHO05D007405 2.0e-09 65.1 55 61.8
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 3.4e-09 64.3 55 60.0
Cpa.g.sc23.140 Carica papaya HOM05D005850 ORTHO05D007405 4.5e-09 63.9 55 60.0
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 5.9e-09 63.5 55 60.0
MBI01_g03370_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D036566 1.0e-08 62.8 52 61.5
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 1.7e-08 62.0 55 60.0
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 5.0e-08 60.5 55 56.4
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 6.5e-08 60.1 52 65.4
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 6.5e-08 60.1 51 62.7
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 6.5e-08 60.1 52 59.6
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 8.5e-08 59.7 52 57.7
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 1.1e-07 59.3 52 59.6
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 1.1e-07 59.3 52 59.6
Peaxi162Scf00560g00069 Petunia axillaris HOM05D005850 ORTHO05D036566 1.1e-07 59.3 52 55.8
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 1.1e-07 59.3 52 59.6
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 1.4e-07 58.9 52 59.6
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 3.2e-07 57.8 52 57.7
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 3.2e-07 57.8 52 57.7
MD00G1220200 Malus domestica HOM05D005850 ORTHO05D007405 4.2e-07 57.4 47 61.7
MD02G1053400 Malus domestica HOM05D005850 ORTHO05D007405 4.2e-07 57.4 47 61.7
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 4.2e-07 57.4 52 59.6
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 4.2e-07 57.4 52 59.6
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 5.5e-07 57.0 52 57.7
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 7.2e-07 56.6 52 51.9
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 9.4e-07 56.2 52 57.7
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 1.2e-06 55.8 52 55.8
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 1.2e-06 55.8 46 60.9
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 1.2e-06 55.8 47 59.6
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 1.2e-06 55.8 47 59.6
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 1.2e-06 55.8 55 54.5
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 1.6e-06 55.5 55 52.7
MD02G1055000 Malus domestica HOM05D005850 ORTHO05D007405 1.6e-06 55.5 34 73.5
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 1.6e-06 55.5 50 58.0
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 2.1e-06 55.1 50 62.0
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 2.7e-06 54.7 52 55.8
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 3.6e-06 54.3 52 55.8
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 3.6e-06 54.3 55 54.5
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 4.7e-06 53.9 55 49.1
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 4.7e-06 53.9 52 55.8
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 6.1e-06 53.5 37 64.9
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 7.9e-06 53.1 52 50.0


User provided reference genes

Program Settings