Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 2.0e-197 692.2 338 100.0
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 4.4e-88 328.9 339 57.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.1e-78 297.7 340 52.1
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 5.1e-76 288.9 341 51.3
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 8.7e-76 288.1 344 50.6
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 5.6e-75 285.4 338 48.5
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.8e-74 282.3 344 49.7
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 4.0e-73 279.3 339 48.1
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.6e-72 276.6 393 44.3
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 2.6e-72 276.6 341 49.3
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.3e-68 264.2 333 46.2
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 6.7e-68 261.9 389 44.5
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.1e-66 256.9 348 46.6
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.1e-66 256.9 347 46.1
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.8e-65 253.8 347 48.7
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 4.0e-65 252.7 357 45.7
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 6.9e-65 251.9 175 75.4
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.0e-64 250.4 337 47.8
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.6e-64 250.0 347 48.4
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 3.4e-64 249.6 175 77.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 1.7e-63 247.3 336 45.2
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.4e-62 244.2 356 43.3
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 1.9e-62 243.8 175 72.0
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 4.2e-62 242.7 341 47.2
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 9.3e-62 241.5 339 44.5
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.6e-61 240.7 338 45.0
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.7e-61 240.0 338 44.7
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 4.6e-61 239.2 176 68.8
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 7.9e-61 238.4 174 68.4
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.8e-60 237.3 174 69.0
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 3.9e-60 236.1 176 67.6
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.1e-59 234.6 337 43.3
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.9e-59 233.8 358 43.9
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 2.5e-59 233.4 345 42.9
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.3e-59 232.6 343 43.4
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 4.3e-59 232.6 343 43.4
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 7.4e-59 231.9 333 43.5
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.3e-58 231.1 330 43.6
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.1e-58 230.3 336 43.8
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.8e-58 229.9 190 63.2
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.7e-58 229.6 336 46.4
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 4.8e-58 229.2 172 71.5
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.1e-57 228.0 334 43.7
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.0e-56 223.8 174 66.1
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 2.6e-56 223.4 441 41.5
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 4.5e-56 222.6 172 70.9
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 1.3e-55 221.1 175 71.4
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.8e-55 219.5 326 47.2
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.8e-55 219.5 326 47.2
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.1e-54 218.0 345 41.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 3.2e-54 216.5 335 46.3
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.7e-53 213.4 301 44.5
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 2.7e-53 213.4 354 41.5
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 3.6e-53 213.0 339 41.6
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-52 211.1 180 62.8
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 1.3e-52 211.1 338 41.1
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.8e-52 210.7 175 63.4
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 3.0e-52 209.9 350 40.6
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.9e-51 207.2 175 61.1
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 7.4e-51 205.3 338 41.1
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 4.8e-50 202.6 173 67.1
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 8.2e-50 201.8 188 59.0
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.8e-49 200.7 286 43.7
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 6.9e-49 198.7 175 65.7
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 1.5e-48 197.6 343 40.2
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 1.5e-48 197.6 342 44.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.4e-48 196.4 179 65.4
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.0e-47 194.9 330 41.2
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.3e-47 194.5 338 41.7
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.7e-47 194.1 337 38.9
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.0e-47 192.6 348 38.8
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 3.2e-46 189.9 178 53.9
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 7.2e-46 188.7 167 67.1
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 2.7e-45 186.8 194 55.2
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 2.0e-43 180.6 341 38.7
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.0e-43 180.6 376 36.7
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.6e-43 180.3 345 39.1
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 3.7e-42 176.4 405 34.3
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 5.3e-41 172.6 174 53.4
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 2.6e-40 170.2 332 37.3
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 7.7e-40 168.7 361 38.0
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.0e-39 168.3 357 36.7
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 1.3e-39 167.9 135 67.4
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.3e-39 167.9 283 38.9
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.1e-38 164.9 341 36.7
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 4.2e-38 162.9 171 52.0
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.3e-36 157.1 347 35.4
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 6.7e-36 155.6 178 52.8
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.6e-35 153.7 337 35.3
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 7.4e-35 152.1 338 34.0
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 7.4e-35 152.1 343 33.5
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.3e-34 151.4 337 34.7
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.3e-34 151.4 170 51.8
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 3.7e-34 149.8 149 57.0
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 6.3e-34 149.1 340 34.7
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 6.3e-34 149.1 154 55.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 1.1e-33 148.3 211 43.6
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 7.0e-33 145.6 334 34.7
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 3.5e-32 143.3 136 58.1
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 4.5e-32 142.9 174 58.6
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 2.2e-31 140.6 103 79.6
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 4.2e-30 136.3 340 33.5
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 8.8e-28 128.6 159 51.6
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 9.7e-27 125.2 182 46.7
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 1.3e-26 124.8 181 48.6
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-26 124.0 182 46.7
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 2.2e-26 124.0 131 48.9
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 3.7e-26 123.2 181 46.4
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 3.7e-26 123.2 182 46.7
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 2.4e-25 120.6 178 46.1
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.4e-25 120.6 181 44.2
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 7.0e-25 119.0 180 47.2
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 4.5e-24 116.3 182 44.0
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 8.5e-23 112.1 191 40.3
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 1.5e-22 111.3 178 43.8
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 1.5e-22 111.3 178 43.8
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 2.5e-22 110.5 176 44.3
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.0e-19 100.9 69 69.6
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.4e-17 94.7 183 41.5
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 1.6e-16 91.3 56 76.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 1.6e-16 91.3 137 45.3
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 5.9e-16 89.4 176 40.3
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 1.3e-15 88.2 389 26.7
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 2.9e-15 87.0 92 52.2
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 5.0e-15 86.3 186 38.2
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 8.6e-15 85.5 193 38.3
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 2.5e-14 84.0 67 67.2
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 5.5e-14 82.8 176 38.6
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 3.0e-12 77.0 161 39.1
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 2.0e-11 74.3 60 61.7
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 9.8e-11 72.0 76 55.3
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.3e-10 71.6 37 75.7
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 3.7e-10 70.1 65 52.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.4e-09 68.2 142 38.7
Lalb_Chr24g0397411 Lupinus albus HOM05D005514 ORTHO05D006563 6.6e-07 59.3 81 49.4
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.1e-06 58.5 40 57.5
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.9e-06 57.8 43 53.5
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 2.5e-06 57.4 43 60.5
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.6e-06 56.2 40 62.5
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 5.6e-06 56.2 40 62.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 5.6e-06 56.2 35 62.9
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 9.5e-06 55.5 40 60.0
Dinv36657 Davidia involucrata HOM05D005514 ORTHO05D006563 9.5e-06 55.5 29 82.8
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 9.5e-06 55.5 26 76.9
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 9.5e-06 55.5 37 56.8


User provided reference genes

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