Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 5.9e-101 370.9 196 100.0
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 8.0e-74 280.8 199 80.4
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 5.6e-67 258.1 202 72.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.1e-66 256.1 198 70.2
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 3.1e-65 252.3 200 74.0
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-64 250.0 197 72.6
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.6e-64 249.2 196 72.4
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 9.9e-64 247.3 199 69.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 4.9e-63 245.0 197 72.6
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.6e-61 240.0 202 74.3
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 2.1e-61 239.6 206 68.4
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.6e-61 238.4 202 68.3
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.6e-61 238.4 202 68.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.7e-60 236.5 201 67.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.7e-60 236.5 203 69.0
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 2.3e-60 236.1 199 68.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.9e-59 233.0 198 65.2
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.5e-59 232.6 201 70.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.3e-59 231.9 205 69.8
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.4e-57 226.1 203 67.0
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 8.4e-55 217.6 200 66.0
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.2e-54 215.7 200 69.0
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.2e-54 215.3 201 68.2
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.1e-53 213.0 200 65.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.1e-53 213.0 204 64.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 3.5e-53 212.2 200 64.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.0e-52 210.7 160 70.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.7e-52 209.9 223 61.0
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 6.6e-52 208.0 224 59.4
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-51 207.2 197 67.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.1e-51 207.2 202 63.4
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.1e-51 207.2 199 62.3
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 7.3e-51 204.5 212 59.4
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.6e-51 204.1 201 66.2
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 5.3e-49 198.4 202 63.9
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 5.3e-49 198.4 208 57.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.9e-49 198.0 210 62.4
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.2e-48 197.2 195 61.5
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.5e-48 196.8 208 63.9
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.3e-47 193.7 212 59.4
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.4e-47 191.4 218 60.1
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 8.4e-47 191.0 204 61.3
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-46 190.7 210 60.5
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.4e-46 189.5 200 61.0
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.2e-46 189.1 200 63.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.3e-46 187.6 201 64.2
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.6e-45 186.8 205 61.5
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-45 186.8 191 65.4
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.7e-45 186.0 204 62.3
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.7e-45 186.0 205 58.0
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 6.0e-45 184.9 211 59.7
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.3e-44 183.7 205 58.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.7e-44 183.3 201 59.7
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 3.9e-44 182.2 205 57.6
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 8.7e-44 181.0 211 59.2
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.9e-43 179.9 201 60.2
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 9.6e-43 177.6 204 59.3
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 9.6e-43 177.6 208 53.4
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.6e-42 175.6 199 52.3
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 3.6e-42 175.6 205 56.1
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.4e-41 173.7 205 57.6
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.3e-41 171.8 211 56.9
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.9e-41 171.4 208 57.2
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 6.9e-41 171.4 206 58.7
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.2e-40 170.6 216 57.9
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.0e-40 169.9 215 58.1
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.5e-40 168.7 215 58.1
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.5e-40 168.7 226 56.6
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.8e-40 168.3 217 57.1
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 9.9e-40 167.5 203 52.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.1e-38 164.1 211 53.6
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.9e-38 163.3 204 55.4
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.4e-38 162.9 210 52.9
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.4e-38 161.8 200 53.5
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 9.3e-38 161.0 194 56.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.6e-37 160.2 205 50.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.6e-37 160.2 133 68.4
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.7e-37 159.5 201 56.2
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 4.6e-37 158.7 201 51.7
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 6.0e-37 158.3 209 51.2
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 7.9e-37 157.9 209 53.6
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-36 157.1 225 54.7
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 2.3e-36 156.4 210 48.6
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.0e-36 156.0 208 52.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.1e-35 154.1 214 48.6
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.5e-35 152.9 208 51.4
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 7.4e-35 151.4 203 51.7
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 4.8e-34 148.7 205 54.1
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.2e-34 148.3 196 51.5
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 6.2e-34 148.3 207 48.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-33 146.4 209 49.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-33 146.0 206 46.1
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.9e-33 144.8 209 48.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 6.9e-33 144.8 209 49.3
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 6.9e-33 144.8 209 49.3
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 9.0e-33 144.4 206 46.6
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 9.0e-33 144.4 206 46.6
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.0e-33 144.4 181 59.7
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-32 143.7 206 46.6
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.0e-32 143.3 146 61.0
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.0e-32 143.3 211 47.9
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.6e-32 142.9 213 50.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.5e-32 142.1 209 49.3
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-32 141.7 209 48.8
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 5.8e-32 141.7 206 46.1
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 5.8e-32 141.7 209 48.8
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.3e-31 140.6 206 45.1
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.2e-31 139.8 214 49.1
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.2e-31 139.8 211 47.9
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.9e-31 139.4 210 47.6
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 2.9e-31 139.4 213 47.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 3.8e-31 139.0 206 44.7
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 3.8e-31 139.0 206 44.7
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 4.9e-31 138.7 206 48.5
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 6.4e-31 138.3 153 59.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.1e-30 137.5 208 46.6
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-30 136.7 201 46.3
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 7.1e-30 134.8 213 46.5
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.7e-29 132.9 150 58.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.7e-29 132.9 201 46.3
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.7e-29 132.9 147 55.8
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.8e-28 130.2 198 48.0
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.7e-28 128.3 209 47.8
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-27 127.5 195 44.1
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.5e-27 127.1 197 46.7
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.9e-27 126.7 183 47.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 3.3e-27 125.9 116 63.8
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.3e-27 125.6 161 50.3
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 7.4e-27 124.8 148 54.7
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.3e-26 124.0 203 45.3
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.1e-26 123.2 212 46.7
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.8e-25 120.2 192 48.4
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.1e-25 119.4 175 45.7
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.0e-24 116.7 196 45.9
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 5.8e-24 115.2 198 48.0
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-23 114.4 209 42.6
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-23 114.4 209 43.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-23 114.4 212 44.3
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.0e-23 114.4 207 42.0
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.3e-23 114.0 182 46.2
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.2e-23 113.2 203 41.9
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.2e-23 113.2 213 46.0
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.9e-23 112.8 213 44.1
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 6.5e-23 111.7 208 41.8
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.1e-22 110.9 165 47.3
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.1e-22 110.9 203 43.3
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.2e-22 109.4 207 42.5
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.5e-22 108.6 91 68.1
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 9.3e-22 107.8 130 56.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-21 107.1 211 44.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 3.5e-21 105.9 215 43.7
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 3.5e-21 105.9 215 43.7
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-20 103.6 213 41.8
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 3.0e-20 102.8 171 49.7
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 6.7e-20 101.7 210 42.9
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 8.7e-20 101.3 201 41.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 9.7e-19 97.8 201 40.3
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.8e-18 95.5 207 39.1
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-18 95.1 120 51.7
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.1e-17 94.4 123 48.8
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 1.1e-17 94.4 211 39.8
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 3.1e-17 92.8 123 51.2
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 5.3e-17 92.0 132 50.8
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 6.9e-17 91.7 123 51.2
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.7e-16 88.2 211 41.7
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 4.2e-14 82.4 210 41.4
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 9.4e-14 81.3 162 38.3
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 6.1e-13 78.6 190 39.5
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 7.9e-13 78.2 106 54.7
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 2.3e-12 76.6 166 45.8
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 3.9e-12 75.9 219 36.1
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 1.1e-11 74.3 197 38.1
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.3e-10 70.9 108 53.7
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.7e-10 70.5 207 34.3
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 6.3e-10 68.6 129 36.4
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 9.1e-09 64.7 123 42.3
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.5e-08 63.9 63 57.1
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-08 63.5 49 65.3
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 7.7e-08 61.6 202 34.7
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.9e-07 59.7 197 37.6
Ah.09g230910 Amaranthus hybridus HOM05D003644 ORTHO05D004305 5.5e-06 55.5 90 43.3


User provided reference genes

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