Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 5.3e-157 557.8 302 100.0
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 5.9e-124 448.0 303 75.9
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 8.8e-120 434.1 303 76.6
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.1e-117 425.6 302 72.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 4.2e-114 415.2 301 75.4
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.1e-111 407.1 301 74.4
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 2.0e-111 406.4 305 71.1
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 3.3e-111 405.6 299 68.9
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.3e-110 403.7 297 72.7
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.2e-110 402.9 301 72.8
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.4e-109 399.4 299 68.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 5.3e-109 398.3 296 72.0
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.0e-109 397.9 304 70.1
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.0e-109 397.9 304 70.1
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 9.1e-109 397.5 304 69.4
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.5e-108 396.7 303 69.0
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.5e-108 395.6 304 70.1
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 4.5e-108 395.2 301 72.4
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 4.5e-108 395.2 300 72.0
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 7.7e-108 394.4 304 67.4
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-107 394.0 304 69.7
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.0e-107 394.0 296 72.3
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.0e-107 394.0 304 67.4
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.3e-107 393.7 299 69.9
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.9e-107 392.5 305 70.2
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.9e-107 392.5 301 72.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.9e-107 392.5 301 72.1
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 2.9e-107 392.5 303 67.3
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.9e-107 392.5 304 69.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-106 390.6 305 67.9
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 3.2e-106 389.0 300 72.7
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 9.4e-106 387.5 303 68.0
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.2e-105 387.1 296 66.2
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.6e-105 385.6 306 67.3
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 6.1e-105 384.8 301 64.8
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.4e-104 383.6 297 66.0
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.8e-104 383.3 300 71.3
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 4.0e-104 382.1 299 64.9
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 5.2e-104 381.7 298 67.4
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 5.2e-104 381.7 303 70.0
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 8.8e-104 380.9 292 65.4
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.5e-103 380.2 301 66.1
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.5e-103 380.2 300 66.3
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.7e-102 376.7 298 61.7
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.1e-101 374.0 298 66.1
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 2.4e-101 372.9 297 69.7
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.6e-100 370.2 305 62.0
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.6e-100 370.2 304 69.4
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.6e-100 369.4 290 63.8
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 3.5e-100 369.0 304 69.1
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 3.5e-100 369.0 298 65.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.5e-100 368.6 290 63.8
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 4.5e-100 368.6 290 63.8
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 5.9e-100 368.2 300 65.7
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 5.9e-100 368.2 305 63.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.9e-100 368.2 304 70.4
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.0e-99 367.5 302 61.6
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.0e-99 367.5 303 65.3
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.3e-99 367.1 302 63.9
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 2.9e-99 365.9 306 67.6
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-98 364.0 306 69.0
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 9.4e-98 360.9 305 64.6
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.6e-97 360.1 305 65.9
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 3.6e-97 359.0 300 67.0
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 6.1e-97 358.2 302 61.9
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 5.7e-95 351.7 308 61.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.2e-94 349.7 296 63.2
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 4.8e-94 348.6 297 58.6
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 8.3e-94 347.8 299 59.5
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.4e-93 347.1 297 66.3
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.4e-93 346.3 300 62.3
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 3.1e-93 345.9 299 66.9
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 5.4e-93 345.1 307 63.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 2.7e-92 342.8 299 63.9
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.5e-92 342.4 298 65.8
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 5.9e-92 341.7 300 66.0
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 5.9e-92 341.7 308 62.0
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 2.2e-91 339.7 296 63.9
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.8e-91 339.0 306 57.5
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 3.8e-91 339.0 259 66.0
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 5.0e-91 338.6 299 64.5
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 5.0e-91 338.6 305 64.9
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.1e-90 337.4 295 66.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.5e-90 337.0 303 59.7
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 5.5e-90 335.1 306 61.1
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.6e-89 333.6 357 57.1
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 2.1e-89 333.2 307 55.7
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 3.6e-89 332.4 304 59.2
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 6.1e-89 331.6 306 59.5
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 6.1e-89 331.6 315 55.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.4e-88 330.5 289 58.8
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 3.0e-88 329.3 300 60.3
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 4.0e-88 328.9 237 73.0
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 6.8e-88 328.2 309 57.9
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 6.8e-88 328.2 309 57.9
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 8.8e-88 327.8 307 60.6
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 8.8e-88 327.8 305 58.4
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.0e-87 326.6 304 58.9
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 4.4e-87 325.5 307 60.3
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 5.7e-87 325.1 310 59.0
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 7.5e-87 324.7 309 57.6
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.3e-86 323.9 309 58.3
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.2e-86 323.2 296 59.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 3.7e-86 322.4 270 70.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 3.7e-86 322.4 241 68.9
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.4e-85 320.5 309 57.6
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.6e-84 317.0 305 55.7
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.7e-84 316.2 305 54.8
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.1e-82 310.8 236 69.1
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.5e-82 310.5 300 56.3
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 3.6e-81 305.8 296 56.1
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.4e-80 303.9 309 58.6
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 3.0e-80 302.8 279 59.1
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 3.4e-79 299.3 228 75.9
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.4e-79 299.3 312 53.5
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.3e-78 297.4 261 61.7
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 9.2e-77 291.2 313 48.2
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.7e-75 287.0 303 51.8
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 3.7e-70 269.2 282 54.6
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 4.6e-68 262.3 298 55.7
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 8.6e-59 231.5 302 46.7
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-58 230.7 186 63.4
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.9e-58 230.3 322 44.7
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.8e-56 223.8 214 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 3.9e-51 206.1 182 55.5
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.6e-47 193.4 212 44.8
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.4e-40 171.0 246 39.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 4.4e-39 166.0 201 47.8
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 3.2e-37 159.8 280 40.4
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 6.6e-35 152.1 131 58.0
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 8.7e-35 151.8 100 74.0
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.0e-32 141.7 132 65.2
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.0e-32 141.7 132 65.2
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 5.1e-27 125.9 195 39.0
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-24 117.9 66 80.3
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 4.5e-23 112.8 167 35.3
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.9e-22 110.2 68 72.1
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 4.2e-21 106.3 168 35.1
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 4.6e-20 102.8 64 76.6
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 2.3e-19 100.5 62 77.4
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.3e-17 94.7 61 72.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 6.5e-14 82.4 50 74.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 3.2e-13 80.1 94 55.3
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.2e-13 79.7 119 44.5
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.9e-12 75.5 45 71.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-11 74.3 45 71.1
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 3.0e-11 73.6 137 46.7
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 6.7e-11 72.4 43 72.1
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.4e-08 64.7 39 71.8
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.4e-08 64.7 53 58.5
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 2.2e-06 57.4 112 41.1


User provided reference genes

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