Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.8e-105 384.0 198 100.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 4.3e-91 338.2 198 85.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.3e-91 338.2 198 83.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.8e-90 335.5 198 84.8
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 4.7e-90 334.7 198 85.9
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 4.7e-90 334.7 198 85.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.2e-90 334.3 198 84.8
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.8e-89 332.8 198 86.4
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.8e-89 332.8 198 84.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 4.0e-89 331.6 198 84.3
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 4.0e-89 331.6 198 84.3
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 6.8e-89 330.9 198 84.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.9e-89 330.5 199 85.9
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 8.9e-89 330.5 198 85.9
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-88 330.1 201 84.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.0e-88 329.3 198 83.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.0e-88 329.3 198 84.8
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.6e-88 328.9 198 83.8
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 2.6e-88 328.9 198 84.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 84.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 86.4
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 83.8
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 83.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.6e-88 327.4 201 82.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 9.9e-88 327.0 197 83.8
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.3e-87 326.6 198 83.8
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.7e-87 326.2 198 83.8
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.2e-87 325.9 201 83.1
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.9e-87 324.7 198 82.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 8.4e-87 323.9 198 81.8
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.4e-86 323.2 198 82.8
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.4e-86 323.2 201 82.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.4e-86 322.4 198 81.3
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.4e-86 322.4 198 81.3
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.4e-86 322.4 198 83.3
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.2e-86 321.6 199 81.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 9.3e-86 320.5 198 80.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.3e-86 320.5 200 81.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.3e-86 320.5 200 81.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.2e-85 320.1 198 81.3
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-85 320.1 198 82.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.6e-85 319.7 198 80.3
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 4.6e-85 318.2 198 81.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.0e-85 317.8 201 79.1
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 6.0e-85 317.8 204 79.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.8e-85 317.4 198 81.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.0e-84 317.0 198 80.3
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.0e-84 317.0 198 80.3
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.3e-84 316.6 198 79.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.3e-84 315.8 198 80.8
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.3e-84 315.8 198 79.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.3e-84 315.8 198 81.3
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.3e-84 315.8 203 78.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 3.9e-84 315.1 198 78.8
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 6.6e-84 314.3 201 79.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 201 79.1
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.1e-83 313.5 201 79.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.5e-83 313.2 200 80.5
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-83 312.8 201 78.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 2.5e-83 312.4 201 79.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.3e-83 312.0 200 79.0
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 4.3e-83 311.6 201 78.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 5.6e-83 311.2 198 79.3
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.6e-83 311.2 198 78.3
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.3e-83 310.8 198 79.3
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.3e-83 310.8 198 79.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 7.3e-83 310.8 198 78.3
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.6e-82 309.7 198 78.8
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.6e-82 309.7 199 78.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.6e-82 309.7 198 80.8
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.1e-82 309.3 198 76.8
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.8e-82 308.9 198 76.8
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.8e-82 308.9 199 77.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 3.6e-82 308.5 198 77.8
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.6e-82 308.5 198 77.8
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 8.1e-82 307.4 197 78.2
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-81 307.0 199 78.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-81 307.0 198 78.3
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.4e-81 306.6 198 77.3
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 198 77.3
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.8e-81 306.2 198 77.3
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.4e-81 305.8 201 78.1
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.4e-81 305.8 198 80.3
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.1e-81 305.4 200 76.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 6.9e-81 304.3 187 82.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 6.9e-81 304.3 198 78.8
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 9.0e-81 303.9 201 77.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 9.0e-81 303.9 201 77.1
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 9.0e-81 303.9 196 76.0
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 9.0e-81 303.9 200 78.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-80 303.5 206 76.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.5e-80 303.1 198 80.3
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.0e-80 302.8 221 70.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 201 76.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.6e-80 302.4 201 76.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.6e-80 302.4 198 76.8
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.6e-80 302.4 198 79.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.4e-80 302.0 210 74.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 5.8e-80 301.2 198 76.3
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 5.8e-80 301.2 196 77.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.8e-80 301.2 214 72.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 9.9e-80 300.4 199 76.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 9.9e-80 300.4 199 76.9
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.7e-79 299.7 200 78.0
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.2e-79 299.3 198 76.3
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.8e-79 298.5 180 84.4
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 4.9e-79 298.1 180 81.7
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 8.4e-79 297.4 198 75.3
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 8.4e-79 297.4 198 77.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-78 296.2 200 76.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.2e-78 295.4 179 82.1
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 7.1e-78 294.3 198 74.7
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 9.3e-78 293.9 205 74.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-77 293.5 223 70.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.7e-77 292.4 199 76.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 200 71.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 200 71.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.7e-76 289.7 200 75.5
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.7e-76 289.7 182 80.2
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.9e-76 288.5 199 75.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.1e-75 287.0 247 63.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.5e-75 285.8 214 71.5
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.8e-74 282.3 180 78.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.8e-74 281.6 201 74.1
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.1e-73 280.4 196 71.9
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.9e-73 277.7 179 78.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.0e-72 276.2 197 69.0
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.2e-71 272.7 213 69.0
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.9e-71 271.6 233 66.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 4.9e-71 271.6 219 66.7
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.1e-70 270.4 197 70.6
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.9e-70 269.6 198 70.7
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 2.4e-70 269.2 193 70.5
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 4.6e-69 265.0 204 69.1
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.0e-68 263.8 189 72.0
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.8e-66 255.8 182 73.1
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 6.2e-66 254.6 189 66.7
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 8.1e-66 254.2 191 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 7.6e-64 247.7 183 68.9
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.7e-63 246.5 199 63.3
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.4e-62 243.4 179 70.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.5e-59 233.4 198 62.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.7e-55 219.9 201 59.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 8.4e-55 217.6 153 73.9
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 9.7e-51 204.1 120 85.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.0e-48 196.4 116 84.5
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 6.1e-45 184.9 181 58.6
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 9.7e-43 177.6 100 89.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.3e-42 174.9 98 89.8
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 7.7e-40 167.9 189 55.6
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.8e-39 165.6 106 79.2
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.9e-36 155.6 101 76.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.8e-31 139.0 80 81.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.0e-31 138.7 70 98.6
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.2e-29 134.0 97 72.2
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.0e-28 131.0 100 68.0
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.8e-28 130.2 198 46.5
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.0e-27 126.7 71 77.5
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-23 113.6 100 66.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.5e-22 110.5 193 38.9
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.7e-21 106.3 76 72.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.3e-20 103.2 194 38.1
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.5e-19 100.5 198 40.4
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 9.8e-19 97.8 73 64.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.1e-17 94.4 198 39.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.2e-16 90.9 66 66.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.0e-15 87.8 65 67.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.4e-14 81.3 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-13 80.9 53 75.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.2e-11 74.3 171 33.9
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 4.4e-11 72.4 60 63.3
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.7e-08 61.6 72 50.0
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.6e-06 55.5 57 54.4


User provided reference genes

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