Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 6.2e-275 950.3 519 100.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.3e-223 778.5 460 83.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.6e-222 776.2 458 82.8
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.1e-218 763.5 444 82.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 5.9e-217 757.7 460 79.1
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 5.9e-217 757.7 421 85.0
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.0e-216 756.9 437 82.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.3e-216 755.7 456 79.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.0e-216 754.6 462 79.7
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 5.0e-216 754.6 465 78.1
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 8.6e-216 753.8 421 84.3
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.9e-215 752.7 459 79.5
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.9e-215 752.7 436 83.9
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 4.3e-215 751.5 465 80.4
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.6e-214 749.6 429 82.1
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.7e-214 748.0 455 79.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 6.8e-213 744.2 458 79.7
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 8.9e-213 743.8 449 79.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.2e-212 743.4 458 79.7
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.4e-212 741.9 466 77.7
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.7e-211 739.6 455 78.9
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 3.7e-211 738.4 466 77.0
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.1e-210 734.9 425 83.3
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 5.4e-210 734.6 424 82.3
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 9.2e-210 733.8 454 77.5
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.6e-209 733.0 427 81.3
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.6e-209 733.0 449 78.6
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.0e-209 732.6 424 82.5
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.7e-209 732.3 420 82.9
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 3.5e-209 731.9 421 82.9
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.0e-208 730.3 455 77.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.0e-208 730.3 454 79.3
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.0e-208 728.8 421 81.2
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 3.9e-208 728.4 421 81.2
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.0e-208 728.0 430 80.0
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 8.6e-208 727.2 437 79.9
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.5e-207 726.5 430 82.1
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.3e-207 725.3 433 80.1
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 4.3e-207 724.9 422 81.0
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 9.5e-207 723.8 456 77.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.8e-206 722.2 458 77.9
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.8e-206 722.2 451 77.2
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 2.8e-206 722.2 426 80.8
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 4.7e-206 721.5 439 80.0
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 4.7e-206 721.5 464 75.2
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.2e-206 721.1 469 76.5
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.1e-205 720.3 436 80.5
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.3e-203 713.4 423 77.5
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.9e-203 712.2 461 75.3
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 6.4e-203 711.1 456 77.4
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.2e-202 708.8 454 75.8
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 3.2e-202 708.8 454 75.8
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 4.1e-202 708.4 453 76.2
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 5.4e-202 708.0 454 75.6
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 5.4e-202 708.0 460 75.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.6e-201 706.4 438 74.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.7e-201 705.7 459 74.9
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 4.6e-201 704.9 456 75.2
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 7.8e-201 704.1 454 76.0
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.1e-200 701.4 443 75.6
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 5.1e-200 701.4 436 75.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 8.6e-200 700.7 443 75.6
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.5e-199 699.9 443 78.1
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.8e-198 695.7 423 78.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 1.8e-197 693.0 455 73.2
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.5e-196 689.9 456 73.5
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 2.6e-196 689.1 421 76.2
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.4e-196 688.7 453 75.3
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 9.9e-196 687.2 419 79.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.7e-195 686.4 420 76.7
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 4.9e-195 684.9 433 76.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 4.9e-195 684.9 420 76.7
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 8.4e-195 684.1 420 76.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 8.4e-195 684.1 554 63.7
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-194 682.9 435 75.9
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-194 682.9 450 74.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 4.1e-194 681.8 422 77.3
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.7e-193 679.1 419 76.1
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.5e-193 678.7 457 72.6
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 7.8e-193 677.6 457 73.1
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 7.8e-193 677.6 457 73.1
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-192 676.4 437 74.8
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.7e-192 676.4 437 74.8
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.7e-192 676.4 422 77.5
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.0e-192 675.6 456 73.2
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.9e-192 675.2 424 76.9
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.9e-192 675.2 516 67.4
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.5e-191 673.3 456 73.0
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-191 672.9 455 73.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.9e-191 672.9 456 74.6
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.3e-191 672.2 456 73.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.3e-191 671.8 456 74.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.6e-190 669.8 426 75.4
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 2.1e-190 669.5 456 72.6
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 2.1e-190 669.5 456 72.6
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.7e-190 668.3 451 72.5
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.7e-190 668.3 451 72.5
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.7e-190 668.3 451 72.5
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-188 663.3 454 74.2
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.4e-187 657.9 443 75.2
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 8.4e-187 657.5 516 65.1
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.4e-186 656.0 418 72.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.2e-185 653.7 392 79.1
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 6.0e-185 651.4 457 72.4
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 3.0e-184 649.0 437 75.3
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 5.8e-180 634.8 425 74.1
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 5.8e-180 634.8 396 77.5
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 8.4e-179 630.9 421 73.2
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.4e-178 628.2 421 69.1
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 9.3e-178 627.5 421 71.5
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.3e-176 622.9 528 61.9
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.6e-174 616.7 450 69.3
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 3.6e-174 615.5 544 61.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.3e-173 611.7 455 68.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 3.8e-171 605.5 439 62.6
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 1.4e-170 603.6 368 75.3
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.4e-170 602.8 397 75.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.5e-169 599.0 359 79.9
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.1e-168 595.1 492 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.7e-168 594.7 447 63.8
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.5e-167 592.8 473 66.4
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.3e-167 592.0 432 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.8e-166 589.3 428 64.3
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 3.1e-165 585.9 433 66.3
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 2.0e-164 583.2 441 67.8
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.5e-163 578.2 418 67.2
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 7.1e-162 574.7 432 65.0
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.2e-161 573.9 421 67.5
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 3.3e-159 565.8 422 65.6
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 6.9e-157 558.1 378 72.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 7.6e-156 554.7 362 75.4
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 5.0e-155 552.0 484 62.2
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 5.1e-152 542.0 368 71.2
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.1e-152 542.0 398 69.3
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 8.7e-152 541.2 349 77.7
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 6.3e-150 535.0 351 76.9
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-148 530.4 315 81.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 8.5e-147 524.6 331 77.6
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.6e-145 520.4 401 63.6
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.4e-144 517.3 425 62.1
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 5.1e-144 515.4 365 68.2
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 6.7e-144 515.0 328 77.4
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 8.8e-144 514.6 454 60.1
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.0e-139 498.8 427 62.5
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.3e-128 463.4 289 78.2
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 5.2e-128 462.2 289 76.5
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.6e-124 450.7 379 60.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.2e-118 430.3 293 73.7
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.0e-103 380.6 210 82.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 2.3e-96 357.1 434 44.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 6.6e-83 312.4 221 71.9
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.2e-81 305.8 241 68.9
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.5e-76 290.0 200 77.0
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 7.3e-74 282.3 291 57.7
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.2e-73 281.6 144 87.5
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.0e-68 262.7 155 78.7
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.1e-65 254.2 194 60.3
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.9e-63 245.4 435 39.5
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.2e-60 238.4 160 63.1
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.7e-60 237.3 409 35.7
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.8e-56 224.6 149 77.9
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.9e-54 216.5 465 32.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.9e-42 177.9 101 77.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.3e-19 101.3 230 30.4
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 3.9e-19 100.5 204 31.9
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 4.4e-18 97.1 49 85.7
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 9.7e-18 95.9 51 86.3
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 9.7e-18 95.9 125 49.6
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 2.4e-16 91.3 48 85.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.4e-11 75.5 63 50.8
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 2.0e-10 71.6 106 39.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.3e-10 70.9 39 84.6
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.2e-07 62.4 42 69.0
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.0e-06 59.3 40 70.0


User provided reference genes

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