Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1786.9 867 100.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1409.0 871 78.5
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1392.5 871 76.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1385.5 868 77.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1381.7 870 76.1
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1380.2 868 77.0
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1379.0 869 76.8
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1375.9 871 75.9
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1374.4 871 75.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1374.4 872 77.5
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1367.1 868 75.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1362.1 863 75.8
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1360.9 869 75.8
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1359.4 878 75.7
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1359.0 864 75.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1355.9 863 76.0
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1355.9 864 75.6
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1354.7 863 76.0
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1351.3 863 75.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1350.5 877 74.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1349.3 863 76.1
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1345.9 873 74.7
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1342.8 868 74.7
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1328.9 868 73.6
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1322.0 867 74.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1316.2 873 73.2
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1314.3 863 72.4
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1313.9 868 72.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1313.9 874 72.8
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1313.5 868 72.4
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1313.1 866 73.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1310.8 864 72.3
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1310.8 866 73.6
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1309.3 863 73.6
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1306.6 868 72.4
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1306.6 872 71.7
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 865 73.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1305.8 865 72.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1301.6 867 71.5
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1300.8 865 72.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1300.0 866 71.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 867 71.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 868 71.3
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1298.9 871 72.3
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1298.9 864 71.8
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 866 72.3
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1297.0 859 71.8
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 864 71.9
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1291.2 870 72.5
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1291.2 863 71.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1290.0 866 71.8
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1288.1 866 72.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1283.5 878 70.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 864 71.3
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1281.2 875 70.5
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1279.6 889 69.5
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 871 71.2
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1269.2 866 71.0
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 868 69.6
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1265.0 863 71.1
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1260.4 863 70.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 868 69.1
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 863 70.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1255.7 885 68.6
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1255.7 869 69.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 880 68.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1254.2 863 69.9
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 870 69.8
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 863 70.2
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 865 69.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 871 69.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 869 68.0
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 866 69.7
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 866 68.9
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 866 68.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 859 68.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 863 68.0
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 826 70.8
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 867 69.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 865 67.5
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 864 67.9
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 865 67.5
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 865 67.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 865 67.9
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 870 68.0
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 870 68.0
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1216.4 864 67.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 864 67.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 869 67.0
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 851 67.6
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1167.1 747 76.4
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1126.7 862 62.2
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 0.0e+00 1105.9 647 80.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1083.2 691 73.5
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 0.0e+00 1077.4 859 64.8
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 0.0e+00 1075.5 861 62.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.5e-297 1026.2 692 70.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 5.3e-295 1017.7 862 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.0e-289 999.2 872 56.3
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 8.0e-283 977.2 863 55.2
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 5.7e-273 944.5 869 52.7
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.8e-202 710.3 778 46.5
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.7e-173 612.1 388 76.0
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 3.4e-164 583.2 478 60.9
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.6e-145 521.2 460 56.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.5e-132 478.0 364 64.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.1e-98 365.5 306 60.8
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 6.3e-70 270.0 204 63.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.3e-69 266.9 168 73.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.0e-56 226.1 175 65.1
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.6e-49 201.1 170 60.0
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.8e-45 188.7 198 54.0
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.6e-36 159.1 216 42.6
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-34 152.9 150 51.3
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.4e-30 137.1 118 60.2
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.4e-30 137.1 85 77.6
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-23 116.3 87 67.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 9.8e-23 113.2 69 76.8
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 2.2e-22 112.1 81 65.4
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.2e-22 112.1 111 53.2
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.9e-22 111.7 90 61.1
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.7e-14 84.7 273 25.3
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-12 79.7 323 24.5
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-12 79.7 308 25.3
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.3e-11 76.3 94 47.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 3.9e-11 74.7 338 23.4
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.1e-10 73.2 315 24.8
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 9.5e-10 70.1 304 26.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 9.5e-10 70.1 65 52.3
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.8e-09 68.6 39 79.5
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.7e-09 67.8 240 25.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 8.1e-09 67.0 303 24.1
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.9e-08 63.5 250 25.6
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-07 63.2 299 24.4
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.4e-07 61.6 378 21.7
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.4e-07 61.6 302 23.2
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 7.6e-07 60.5 300 24.7
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.7e-06 59.3 221 27.1
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.2e-06 58.9 84 41.7
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-06 57.4 109 33.0


User provided reference genes

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