Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 6.6e-227 790.4 411 100.0
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 5.1e-187 657.9 412 84.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.5e-186 656.4 412 83.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-185 652.9 412 83.3
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.1e-185 652.5 411 82.0
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.1e-185 652.5 413 83.5
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 2.1e-185 652.5 417 82.7
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.4e-184 649.0 411 82.5
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.2e-183 646.7 411 82.0
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.3e-182 643.3 411 81.0
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.7e-182 642.9 410 82.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.7e-182 642.9 409 81.4
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.9e-182 642.1 416 81.7
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 8.4e-182 640.6 409 82.4
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.1e-181 640.2 416 82.0
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.4e-181 639.8 411 80.0
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 5.4e-181 637.9 414 81.2
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.1e-180 636.0 409 80.9
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 3.5e-180 635.2 413 81.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.3e-179 632.5 413 80.1
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 3.0e-179 632.1 409 80.9
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 5.1e-179 631.3 431 78.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 6.6e-179 630.9 414 79.7
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.1e-178 630.2 410 79.0
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.1e-178 630.2 411 80.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.9e-178 629.4 414 80.4
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.3e-178 628.6 413 80.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.3e-178 627.5 413 80.1
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.3e-177 626.7 418 79.4
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.3e-177 626.7 414 78.5
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.6e-177 625.2 427 77.5
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.6e-177 625.2 416 79.3
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 8.1e-177 624.0 413 78.9
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.8e-176 622.9 411 79.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 5.3e-176 621.3 417 77.7
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 6.9e-176 620.9 407 78.9
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 9.0e-176 620.5 409 79.5
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.2e-175 620.2 416 79.3
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.5e-175 619.8 411 78.6
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.6e-175 619.0 414 79.2
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.8e-175 617.8 413 79.7
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.8e-175 617.8 413 78.9
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 5.8e-175 617.8 411 78.3
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 9.9e-175 617.1 414 77.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.7e-174 616.3 411 78.3
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.9e-174 615.5 413 78.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.4e-173 612.5 450 75.3
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 4.2e-173 611.7 412 78.6
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 5.4e-173 611.3 417 77.5
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.1e-173 610.9 412 77.9
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 7.1e-173 610.9 414 77.3
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-172 609.8 421 77.4
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.1e-172 609.4 419 77.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.1e-172 609.4 411 77.9
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.6e-172 608.2 422 77.0
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 6.0e-172 607.8 411 76.6
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-171 606.3 422 76.3
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.8e-171 606.3 412 76.7
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 3.9e-171 605.1 413 77.0
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 3.9e-171 605.1 420 76.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 6.7e-171 604.4 414 78.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 6.7e-171 604.4 413 77.5
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.7e-171 604.0 422 76.1
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 8.7e-171 604.0 412 76.7
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 8.7e-171 604.0 413 77.2
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 8.7e-171 604.0 408 77.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.5e-170 603.2 430 74.4
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.3e-170 602.1 414 77.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 7.4e-170 600.9 415 76.4
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.3e-169 600.1 416 75.2
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.6e-169 599.7 412 76.5
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.7e-169 598.6 416 75.5
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.7e-169 598.6 411 75.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.1e-169 597.4 411 75.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.8e-168 596.3 410 76.6
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-168 596.3 442 72.6
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-168 596.3 442 72.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.1e-168 595.5 409 76.0
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.0e-168 595.1 411 76.2
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.0e-168 595.1 416 76.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.2e-167 593.6 416 75.0
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 5.8e-167 591.3 416 74.3
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 5.8e-167 591.3 357 84.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.2e-166 589.3 415 75.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.2e-166 589.3 411 74.5
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.9e-166 589.0 415 75.2
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.5e-165 585.9 414 75.4
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.2e-165 585.5 421 74.3
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.7e-164 582.4 423 74.2
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 2.7e-164 582.4 413 75.5
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 6.0e-164 581.3 414 74.6
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.8e-163 579.7 417 73.9
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.0e-163 578.9 424 71.9
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.9e-162 576.2 341 86.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.3e-162 575.5 418 72.7
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.3e-161 573.5 391 75.7
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.1e-161 572.8 418 74.4
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.8e-161 571.6 415 73.5
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 4.0e-160 568.5 415 73.5
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.7e-155 551.2 361 79.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.7e-155 551.2 361 79.2
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.3e-154 548.5 412 73.8
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 8.2e-153 544.3 350 79.4
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 6.9e-152 541.2 414 70.5
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.2e-148 530.4 480 64.6
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.2e-148 530.4 480 64.6
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 8.2e-145 517.7 353 75.9
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.1e-144 515.4 315 83.5
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 8.8e-139 497.7 420 66.7
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.6e-138 496.1 418 62.9
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 9.1e-136 487.6 411 65.2
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.3e-134 483.8 358 72.9
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 9.1e-128 461.1 424 57.5
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 5.9e-119 431.8 429 59.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 5.2e-115 418.7 271 79.3
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 8.8e-115 417.9 383 57.7
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.2e-114 417.5 408 59.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.4e-106 389.0 343 64.1
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.3e-101 372.5 366 60.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 9.5e-101 371.3 324 63.9
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.7e-87 326.6 319 55.2
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.9e-81 305.8 420 43.3
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.4e-81 305.1 261 63.2
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.9e-77 293.9 420 41.7
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.1e-69 268.1 464 38.4
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.2e-66 258.1 469 36.0
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.1e-64 248.8 325 45.8
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.1e-59 235.0 126 87.3
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.2e-56 223.0 315 43.8
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.9e-53 214.2 134 79.1
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 9.0e-51 205.3 344 38.7
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.6e-47 194.5 335 35.8
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.7e-46 189.1 103 86.4
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.7e-46 188.7 115 80.9
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.1e-40 171.8 112 75.9
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 7.9e-39 165.6 131 67.2
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 8.5e-33 145.6 98 74.5
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.6e-31 139.8 138 61.6
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 4.2e-24 116.7 215 37.7
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.2e-23 115.2 68 83.8
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-22 111.3 58 82.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 8.2e-20 102.4 134 47.0
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.8e-19 101.3 78 70.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-19 101.3 107 53.3
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 2.7e-15 87.4 65 67.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.6e-13 80.9 99 53.5
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.4e-11 74.3 60 70.0
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.2e-10 72.0 96 42.7
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.2e-09 67.8 50 62.0
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 2.2e-09 67.8 44 77.3
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.9e-09 67.4 42 81.0
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.0e-09 66.6 43 69.8
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 1.1e-08 65.5 61 63.9
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.5e-08 65.1 63 61.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.2e-07 62.0 63 54.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 80.6
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 80.6
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 80.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 4.7e-07 60.1 72 54.2
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 2.3e-06 57.8 36 80.6
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 5.2e-06 56.6 120 28.3
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 6.8e-06 56.2 44 68.2
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 6.8e-06 56.2 43 67.4
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 120 28.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 120 28.3
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 8.8e-06 55.8 120 28.3


User provided reference genes

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