Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.3e-76 289.7 145 100.0
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 1.6e-55 219.5 142 80.3
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 3.6e-55 218.4 140 80.0
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 3.6e-55 218.4 142 79.6
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 4.0e-54 214.9 141 79.4
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 5.8e-53 211.1 143 77.6
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 9.9e-53 210.3 145 77.2
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.3e-52 209.9 147 77.6
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 2.2e-52 209.1 148 76.4
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 9.2e-51 203.8 148 74.3
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.6e-50 203.0 151 72.2
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.1e-50 202.6 148 72.3
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.7e-50 202.2 144 74.3
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 2.3e-49 199.1 140 73.6
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 3.0e-49 198.7 145 71.7
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.9e-49 198.4 142 73.9
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 8.7e-49 197.2 143 72.7
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.9e-48 196.1 140 72.1
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.5e-48 195.7 144 71.5
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.3e-48 195.3 144 70.8
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 3.3e-48 195.3 148 69.6
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 4.3e-48 194.9 144 70.1
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 1.2e-47 193.4 144 70.8
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.2e-47 193.4 140 71.4
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 2.8e-47 192.2 125 78.4
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 2.8e-47 192.2 142 71.8
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.6e-47 191.8 144 69.4
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 3.6e-47 191.8 142 68.3
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 4.7e-47 191.4 145 67.6
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 4.7e-47 191.4 145 67.6
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.2e-47 191.0 147 73.5
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 6.2e-47 191.0 147 73.5
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.4e-46 189.9 140 70.7
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.4e-46 189.1 142 73.2
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.4e-46 189.1 144 71.5
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 5.2e-46 188.0 126 77.8
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.2e-45 186.8 145 66.2
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.0e-45 186.0 128 78.9
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.4e-45 185.3 140 73.6
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 4.4e-45 184.9 154 70.8
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 4.4e-45 184.9 143 70.6
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 4.4e-45 184.9 142 66.9
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 4.4e-45 184.9 147 67.3
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 9.9e-45 183.7 143 71.3
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.8e-44 181.8 143 65.7
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.1e-43 180.3 128 71.9
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 1.4e-43 179.9 144 68.1
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 1.9e-43 179.5 139 66.9
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 2.4e-43 179.1 142 69.7
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 2.4e-43 179.1 142 69.7
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 2.4e-43 179.1 141 68.8
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 3.2e-43 178.7 143 72.0
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 5.4e-43 177.9 145 68.3
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.6e-42 176.4 140 66.4
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 2.1e-42 176.0 145 67.6
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 2.7e-42 175.6 140 67.1
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.7e-42 175.6 128 70.3
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 2.7e-42 175.6 144 67.4
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 2.7e-42 175.6 140 67.1
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 3.5e-42 175.3 148 64.9
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 3.5e-42 175.3 128 73.4
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 3.5e-42 175.3 143 67.1
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.6e-42 174.9 125 77.6
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 1.7e-41 172.9 140 65.7
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 2.3e-41 172.6 141 66.7
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 2.3e-41 172.6 128 73.4
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 3.0e-41 172.2 141 63.8
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 5.1e-41 171.4 138 71.0
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.1e-40 170.2 123 72.4
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.5e-40 169.1 145 65.5
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 5.6e-40 167.9 144 66.0
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 9.6e-40 167.2 144 66.0
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 2.8e-39 165.6 140 63.6
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 3.6e-39 165.2 142 66.2
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 4.8e-39 164.9 140 63.6
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 8.1e-39 164.1 141 65.2
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 1.1e-38 163.7 131 64.9
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.1e-38 163.7 147 61.9
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 2.4e-38 162.5 142 61.3
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 3.1e-38 162.2 144 61.1
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 5.3e-38 161.4 141 63.8
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 5.3e-38 161.4 141 61.7
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 6.9e-38 161.0 146 63.7
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 6.9e-38 161.0 141 61.7
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.5e-37 159.8 125 68.0
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.3e-36 156.8 146 61.6
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.3e-36 156.8 140 62.9
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.3e-36 156.8 146 63.7
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 1.7e-36 156.4 128 66.4
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 1.7e-36 156.4 128 66.4
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.7e-36 156.4 140 63.6
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 4.9e-36 154.8 145 63.4
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 4.9e-36 154.8 146 58.9
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 6.4e-36 154.5 146 61.0
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 8.4e-36 154.1 142 60.6
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 8.4e-36 154.1 141 57.4
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 4.2e-35 151.8 142 61.3
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 4.2e-35 151.8 130 65.4
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.2e-34 150.2 142 59.2
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.2e-34 150.2 130 63.1
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 2.1e-34 149.4 135 67.4
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 4.6e-34 148.3 116 73.3
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 1.0e-33 147.1 133 60.2
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.8e-33 146.4 91 81.3
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 3.0e-33 145.6 129 65.1
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.0e-33 145.6 134 59.0
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 6.7e-33 144.4 125 64.0
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.1e-32 143.7 129 65.1
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 1.5e-32 143.3 125 63.2
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 7.4e-32 141.0 152 56.6
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.5e-29 133.3 126 61.9
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 9.9e-29 130.6 121 57.9
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 4.2e-27 125.2 123 60.2
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.0e-25 120.6 89 71.9
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.0e-25 120.6 125 52.0
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 1.3e-25 120.2 136 47.8
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.5e-24 116.7 95 64.2
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 1.3e-23 113.6 131 53.4
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.1e-23 112.8 127 51.2
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.4e-22 110.2 142 45.8
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.4e-22 110.2 122 54.1
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.2e-21 107.1 141 44.7
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 5.8e-21 104.8 99 63.6
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.3e-17 93.6 104 59.6
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 1.8e-17 93.2 154 43.5
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 6.7e-17 91.3 104 58.7
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.6e-13 79.3 91 47.3
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 3.2e-11 72.4 53 62.3
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 2.1e-10 69.7 116 40.5
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 1.4e-09 67.0 87 54.0
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.3e-07 60.5 43 65.1


User provided reference genes

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