Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 5.6e-153 544.3 282 100.0
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 7.3e-60 235.0 237 57.4
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.6e-54 217.2 224 57.1
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.3e-52 209.5 218 54.1
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.6e-51 206.1 230 53.0
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 6.8e-50 201.8 219 54.3
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.5e-49 200.7 255 48.6
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.7e-48 197.2 215 53.0
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 2.4e-47 193.4 231 50.2
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.2e-47 193.0 209 51.7
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.2e-47 193.0 209 51.7
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.2e-47 193.0 228 50.4
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.4e-47 192.2 239 51.5
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 7.1e-47 191.8 242 50.0
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 7.1e-47 191.8 243 47.3
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.1e-46 190.3 243 45.7
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-45 187.6 234 50.9
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 2.3e-45 186.8 214 52.8
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 3.9e-45 186.0 229 51.1
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 9.6e-44 181.4 223 48.4
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.2e-43 181.0 216 52.3
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 2.1e-43 180.3 218 49.5
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.8e-43 179.9 237 50.2
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 6.2e-43 178.7 233 50.2
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.4e-42 177.6 219 51.6
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.8e-42 177.2 225 51.1
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 3.1e-42 176.4 245 46.5
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 4.0e-42 176.0 225 50.7
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.2e-41 174.5 222 49.5
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.2e-41 174.5 234 45.3
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.5e-41 174.1 218 50.0
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.0e-41 173.7 215 50.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 1.3e-40 171.0 238 47.5
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.2e-40 170.2 216 49.5
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.9e-40 169.9 240 47.5
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 4.9e-40 169.1 222 48.6
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 8.4e-40 168.3 223 46.6
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.9e-39 167.2 239 45.6
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 4.2e-39 166.0 211 46.9
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.4e-39 165.6 227 46.7
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 5.4e-39 165.6 246 46.3
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 2.1e-38 163.7 211 46.9
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 3.5e-38 162.9 242 47.1
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 3.5e-38 162.9 241 44.8
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 6.0e-38 162.2 231 47.2
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 7.8e-38 161.8 246 45.5
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.0e-37 161.4 236 43.6
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 1.0e-37 161.4 225 46.7
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.6e-37 158.7 228 49.1
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 6.6e-37 158.7 244 48.4
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.1e-36 157.9 215 47.9
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 2.5e-36 156.8 242 43.0
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 3.3e-36 156.4 240 42.5
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 3.3e-36 156.4 229 48.0
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 4.3e-36 156.0 207 45.9
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.6e-36 155.6 225 47.6
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 9.6e-36 154.8 211 47.9
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.3e-35 154.5 216 47.7
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.3e-35 154.5 224 48.2
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.3e-35 154.5 213 45.1
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.1e-35 153.7 219 46.1
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.8e-35 153.3 211 45.5
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.8e-35 153.3 224 48.2
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 3.6e-35 152.9 212 47.2
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 3.6e-35 152.9 215 45.1
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 6.2e-35 152.1 231 43.3
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.1e-35 151.8 219 47.5
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.4e-34 150.2 221 47.5
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.9e-34 148.7 242 41.3
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 6.9e-34 148.7 208 45.2
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 9.0e-34 148.3 217 44.7
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 1.5e-33 147.5 209 45.0
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 3.4e-33 146.4 218 42.7
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 4.4e-33 146.0 230 42.6
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 4.4e-33 146.0 230 42.6
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 4.4e-33 146.0 215 45.6
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 5.8e-33 145.6 213 46.0
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 5.8e-33 145.6 214 44.4
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 7.6e-33 145.2 236 42.4
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.3e-32 144.4 208 44.2
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-32 144.4 224 42.9
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.7e-32 144.1 235 42.6
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.7e-32 144.1 239 41.4
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.2e-32 143.7 217 46.5
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 2.9e-32 143.3 209 44.0
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.8e-32 142.9 239 42.3
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.8e-32 142.9 232 41.4
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 4.9e-32 142.5 208 47.1
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 6.4e-32 142.1 226 42.5
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.4e-31 140.2 211 44.5
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 3.2e-31 139.8 227 41.4
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 5.4e-31 139.0 235 40.0
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 9.3e-31 138.3 224 41.5
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 9.3e-31 138.3 213 45.5
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.2e-30 137.9 222 44.6
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.6e-30 137.5 241 41.5
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.7e-30 136.7 240 41.2
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 4.6e-30 136.0 225 43.1
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 1.3e-29 134.4 213 40.8
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 3.0e-29 133.3 220 45.9
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 3.9e-29 132.9 214 44.9
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 5.1e-29 132.5 220 45.9
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 6.6e-29 132.1 218 42.2
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 8.7e-29 131.7 214 44.4
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.1e-28 131.3 222 44.6
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.5e-28 131.0 365 31.2
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 4.3e-28 129.4 216 42.1
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 4.3e-28 129.4 230 41.7
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 5.6e-28 129.0 209 43.1
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 5.6e-28 129.0 209 43.1
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 5.6e-28 129.0 209 43.1
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 5.6e-28 129.0 210 45.2
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 5.6e-28 129.0 223 42.2
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 9.6e-28 128.3 219 44.3
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.3e-27 127.9 207 45.9
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.6e-27 127.5 215 42.8
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.6e-27 127.5 217 37.8
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 2.8e-27 126.7 217 42.9
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.8e-26 124.0 209 42.1
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 9.0e-26 121.7 225 38.2
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.5e-25 120.9 210 41.4
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.5e-25 120.9 190 46.3
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.5e-25 120.9 209 39.2
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 2.2e-24 117.1 210 40.0
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 4.9e-24 115.9 134 49.3
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 6.4e-24 115.5 210 37.6
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 8.4e-24 115.2 208 39.9
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.4e-23 114.4 219 37.4
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.4e-23 114.4 219 37.4
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.4e-23 114.4 182 40.7
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 7.9e-22 108.6 211 39.3
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 7.9e-22 108.6 162 39.5
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 7.9e-22 108.6 227 37.4
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.8e-21 107.5 222 36.9
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.5e-20 104.4 215 36.7
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 2.5e-20 103.6 209 41.1
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.5e-20 103.6 202 35.6
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 9.6e-20 101.7 146 44.5
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.3e-19 101.3 120 48.3
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 1.3e-19 101.3 212 38.7
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 3.7e-19 99.8 211 42.2
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.1e-18 98.2 206 36.4
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.1e-18 98.2 122 48.4
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.4e-18 97.8 122 52.5
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 1.8e-18 97.4 209 35.9
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.8e-18 97.4 203 34.5
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 6.9e-18 95.5 125 45.6
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.6e-17 93.6 139 41.7
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 3.4e-17 93.2 143 39.9
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-16 91.3 244 31.1
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 1.7e-16 90.9 122 44.3
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 2.2e-16 90.5 227 33.0
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 3.8e-16 89.7 115 43.5
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 3.8e-16 89.7 230 32.6
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.1e-15 88.2 222 32.9
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.2e-14 84.7 223 33.6
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.6e-14 82.8 219 33.8
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.6e-11 74.3 129 34.9
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 4.8e-11 72.8 201 33.3
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 3.4e-09 66.6 117 40.2
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 7.6e-09 65.5 150 36.7
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 1.0e-08 65.1 73 47.9
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.3e-08 64.7 230 28.3
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 1.7e-08 64.3 43 72.1
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 2.9e-08 63.5 223 25.6
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.1e-07 61.6 259 29.0
CAN.G183.13 Capsicum annuum HOM05D003841 ORTHO05D004602 1.9e-07 60.8 65 49.2
CAN.G935.4 Capsicum annuum HOM05D003841 ORTHO05D004602 2.5e-07 60.5 49 57.1
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 5.5e-07 59.3 260 26.9
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 5.5e-07 59.3 215 32.1
Pp3c9_19620 Physcomitrium patens HOM05D002766 ORTHO05D002809 9.3e-07 58.5 257 26.5
CAN.G1207.10 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-06 57.8 55 50.9
CAN.G362.43 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-06 57.8 66 47.0


User provided reference genes

Program Settings