Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 5.0e-120 434.5 226 100.0
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 7.8e-89 330.9 193 88.1
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.5e-87 326.6 193 85.5
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.3e-87 324.3 193 85.0
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 9.6e-87 323.9 193 88.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.4e-85 320.1 193 85.5
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.4e-85 319.3 193 85.5
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 8.9e-85 317.4 193 85.0
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.0e-84 316.2 193 84.5
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 9.9e-84 313.9 195 84.6
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 9.9e-84 313.9 193 83.4
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 8.4e-83 310.8 194 82.0
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.7e-81 305.8 192 82.3
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 7.8e-81 304.3 195 82.1
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 8.7e-80 300.8 191 79.6
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 4.3e-79 298.5 195 81.0
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 7.3e-79 297.7 194 79.9
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-78 296.6 193 80.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.1e-78 296.2 194 78.4
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.8e-77 293.1 193 78.8
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 2.4e-77 292.7 194 77.8
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 7.6e-76 287.7 192 76.0
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.9e-75 285.8 195 76.4
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.9e-75 285.8 192 75.0
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 4.9e-75 285.0 192 75.0
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 4.9e-75 285.0 192 75.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.9e-74 283.1 195 76.9
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.2e-74 282.3 177 81.9
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 4.2e-74 282.0 194 76.8
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 9.3e-74 280.8 199 74.9
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.2e-73 280.4 194 75.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.2e-73 280.4 194 76.3
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.2e-73 280.4 194 76.3
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.6e-73 280.0 191 73.3
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.6e-73 280.0 195 76.4
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.1e-73 279.6 194 74.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.7e-73 279.3 193 75.6
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 4.6e-73 278.5 192 74.5
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 6.0e-73 278.1 199 73.9
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 7.9e-73 277.7 194 73.2
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 1.0e-72 277.3 202 73.8
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.3e-72 276.2 202 74.3
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 3.9e-72 275.4 192 74.5
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 3.9e-72 275.4 192 72.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 5.1e-72 275.0 200 75.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 5.1e-72 275.0 195 74.4
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.6e-72 274.6 197 74.1
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.1e-71 273.9 194 75.3
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.1e-71 273.9 190 75.3
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.5e-71 273.5 198 74.2
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.5e-71 272.7 194 74.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.3e-71 272.3 199 72.9
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 5.6e-71 271.6 193 73.6
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 7.3e-71 271.2 192 73.4
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 9.6e-71 270.8 194 74.7
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.3e-70 270.4 194 73.7
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.6e-70 270.0 199 70.4
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.6e-70 270.0 196 73.0
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.6e-70 270.0 197 72.6
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-70 269.6 194 73.2
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 2.8e-70 269.2 192 72.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.8e-70 268.5 194 74.7
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 4.8e-70 268.5 199 73.4
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 6.2e-70 268.1 194 73.7
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 6.2e-70 268.1 194 73.7
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 6.2e-70 268.1 193 72.5
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.2e-70 268.1 193 72.5
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.2e-70 268.1 193 72.5
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.2e-70 268.1 193 72.5
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 6.2e-70 268.1 198 71.7
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 6.2e-70 268.1 198 69.7
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 8.1e-70 267.7 194 73.7
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 8.1e-70 267.7 194 73.7
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 8.1e-70 267.7 194 73.2
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 8.1e-70 267.7 194 73.7
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 8.1e-70 267.7 199 72.9
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.1e-70 267.7 195 73.3
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 8.1e-70 267.7 194 74.2
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.1e-69 267.3 193 73.6
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.1e-69 267.3 187 74.3
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.8e-69 266.5 196 74.5
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.8e-69 266.5 199 69.8
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.8e-69 266.5 193 75.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.8e-69 266.5 198 68.2
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 3.1e-69 265.8 198 73.7
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.1e-69 265.8 195 73.8
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.0e-69 265.4 194 73.2
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 4.0e-69 265.4 196 73.5
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 4.0e-69 265.4 194 72.7
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.0e-69 265.4 196 72.4
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.0e-69 265.4 196 72.4
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.0e-69 265.4 197 73.6
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 4.0e-69 265.4 197 73.6
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 5.3e-69 265.0 194 72.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 5.3e-69 265.0 194 73.2
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 5.3e-69 265.0 194 72.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 5.3e-69 265.0 194 72.7
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 5.3e-69 265.0 194 73.2
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 9.0e-69 264.2 198 73.2
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.0e-69 264.2 197 71.1
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 9.0e-69 264.2 189 73.5
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.2e-68 263.8 194 73.2
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.2e-68 263.8 194 73.2
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 1.2e-68 263.8 196 72.4
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.2e-68 263.8 198 73.2
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.2e-68 263.8 196 72.4
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.5e-68 263.5 196 73.5
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.5e-68 263.5 196 72.4
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.5e-68 263.5 196 74.0
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.5e-68 263.5 194 71.6
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 2.0e-68 263.1 194 73.2
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.0e-68 263.1 195 72.3
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.0e-68 263.1 195 73.3
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.0e-68 263.1 193 71.5
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 2.0e-68 263.1 199 70.4
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.5e-68 261.9 194 70.6
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 5.8e-68 261.5 199 70.4
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 7.6e-68 261.2 195 72.8
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.7e-67 260.0 195 73.3
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.7e-67 260.0 188 72.3
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.2e-67 259.6 195 71.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 3.8e-67 258.8 193 69.4
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 3.8e-67 258.8 197 71.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 6.4e-67 258.1 197 71.1
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 6.4e-67 258.1 199 70.9
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 6.4e-67 258.1 197 66.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-66 257.3 197 70.6
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-66 257.3 197 70.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.7e-65 252.7 198 71.2
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-64 250.4 197 69.5
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.0e-64 249.2 196 66.8
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.9e-63 246.5 193 67.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.3e-62 243.8 187 68.4
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.6e-62 243.4 188 71.8
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 2.1e-62 243.0 185 70.3
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.1e-62 243.0 193 65.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 2.1e-62 243.0 194 68.6
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.7e-62 242.3 193 65.8
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 4.8e-62 241.9 194 69.6
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 4.0e-61 238.8 163 74.2
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.0e-61 238.8 196 66.8
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 9.0e-61 237.7 197 65.0
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.3e-59 233.8 200 65.0
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-58 230.7 211 59.2
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.2e-57 227.3 199 63.3
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.1e-55 220.7 199 62.3
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.3e-55 218.8 171 67.3
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-53 214.2 199 59.3
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 4.2e-50 202.2 142 72.5
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.5e-49 199.1 194 57.2
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 9.4e-42 174.5 162 57.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.3e-35 154.1 114 69.3
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 6.5e-35 151.8 171 52.6
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.1e-34 151.0 200 46.0
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 5.3e-29 132.1 101 67.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-25 120.9 114 60.5
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 1.2e-25 120.9 76 80.3
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.2e-25 120.9 171 48.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-23 113.6 112 58.9
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.7e-20 103.2 98 61.2
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 9.1e-13 78.2 43 83.7
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.7e-11 73.9 90 53.3
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 7.2e-10 68.6 72 56.9
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 2.0e-07 60.5 31 87.1
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 6.3e-06 55.5 68 50.0


User provided reference genes

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