Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.8e-45 184.9 90 100.0
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 3.4e-11 71.6 52 67.3
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 4.4e-11 71.2 32 100.0
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 5.8e-11 70.9 32 96.9
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 5.8e-11 70.9 32 96.9
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 7.6e-11 70.5 61 60.7
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 7.6e-11 70.5 58 62.1
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.9e-11 70.1 48 68.8
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 9.9e-11 70.1 52 65.4
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.3e-10 69.7 48 66.7
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.3e-10 69.7 42 73.8
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.3e-10 69.7 32 93.8
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.3e-10 69.7 32 93.8
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.3e-10 69.7 32 93.8
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 1.3e-10 69.7 32 93.8
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 1.3e-10 69.7 32 93.8
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.7e-10 69.3 32 93.8
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.7e-10 69.3 31 96.8
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.7e-10 69.3 32 90.6
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.7e-10 69.3 32 93.8
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.7e-10 69.3 32 90.6
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 2.9e-10 68.6 31 96.8
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 2.9e-10 68.6 32 90.6
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 2.9e-10 68.6 48 66.7
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 2.9e-10 68.6 32 90.6
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.9e-10 68.6 48 66.7
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.9e-10 68.6 48 66.7
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.9e-10 68.6 48 66.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 2.9e-10 68.6 50 64.0
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.8e-10 68.2 32 87.5
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.8e-10 68.2 32 87.5
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.8e-10 68.2 32 87.5
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.8e-10 68.2 32 90.6
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.8e-10 68.2 47 68.1
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 4.9e-10 67.8 48 68.8
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 4.9e-10 67.8 48 68.8
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 4.9e-10 67.8 48 68.8
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 4.9e-10 67.8 48 66.7
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.9e-10 67.8 32 90.6
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 6.4e-10 67.4 51 64.7
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 6.4e-10 67.4 31 93.5
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 6.4e-10 67.4 48 66.7
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 8.4e-10 67.0 32 87.5
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 8.4e-10 67.0 58 60.3
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.1e-09 66.6 32 93.8
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.9e-09 65.9 32 87.5
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 2.4e-09 65.5 32 84.4
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.4e-09 65.5 32 87.5
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 2.4e-09 65.5 32 90.6
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.4e-09 65.5 32 87.5
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 3.2e-09 65.1 32 87.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.2e-09 64.7 32 84.4
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 4.2e-09 64.7 32 84.4
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 4.2e-09 64.7 32 87.5
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.4e-09 64.3 58 56.9
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.4e-09 64.3 58 56.9
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 5.4e-09 64.3 32 81.2
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 7.1e-09 63.9 32 84.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 7.1e-09 63.9 32 84.4
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 9.3e-09 63.5 31 87.1
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 9.3e-09 63.5 31 87.1
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 9.3e-09 63.5 31 87.1
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 9.3e-09 63.5 58 56.9
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 9.3e-09 63.5 31 87.1
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 1.2e-08 63.2 31 87.1
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.2e-08 63.2 52 55.8
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.6e-08 62.8 48 60.4
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.6e-08 62.8 31 87.1
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-08 62.8 32 84.4
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-08 62.8 32 84.4
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-08 62.8 32 84.4
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.1e-08 62.4 32 84.4
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 2.1e-08 62.4 48 62.5
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 2.1e-08 62.4 32 75.0
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 2.1e-08 62.4 32 75.0
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 2.7e-08 62.0 48 60.4
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.7e-08 62.0 32 81.2
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 3.5e-08 61.6 32 81.2
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 3.5e-08 61.6 32 81.2
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 3.5e-08 61.6 31 87.1
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 3.5e-08 61.6 58 55.2
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 4.6e-08 61.2 32 81.2
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 6.0e-08 60.8 30 86.7
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 7.8e-08 60.5 58 53.4
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.3e-07 59.7 40 65.0
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.3e-07 59.7 45 66.7
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.1e-06 56.6 46 63.0
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 4.3e-06 54.7 40 65.0


User provided reference genes

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