Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 3.9e-93 344.7 168 100.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 2.7e-25 119.4 81 70.4
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.7e-25 119.4 92 62.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 7.7e-25 117.9 77 68.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.7e-25 117.9 80 67.5
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 1.3e-24 117.1 81 72.8
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.7e-24 116.7 80 67.5
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.7e-24 116.7 80 67.5
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.7e-24 116.7 80 67.5
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.2e-24 116.3 81 69.1
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 3.8e-24 115.5 78 71.8
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.8e-24 115.5 81 66.7
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 5.0e-24 115.2 82 65.9
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 6.5e-24 114.8 81 66.7
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 8.5e-24 114.4 81 66.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 8.5e-24 114.4 81 66.7
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 8.5e-24 114.4 81 65.4
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 8.5e-24 114.4 81 69.1
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.5e-23 113.6 73 68.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.5e-23 113.6 80 71.2
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.9e-23 113.2 81 64.2
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.9e-23 113.2 79 67.1
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 3.2e-23 112.5 81 66.7
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 4.2e-23 112.1 81 65.4
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.2e-23 112.1 81 65.4
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 5.5e-23 111.7 81 64.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.5e-23 111.7 81 64.2
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 5.5e-23 111.7 81 71.6
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 5.5e-23 111.7 80 65.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 7.2e-23 111.3 81 64.2
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.2e-23 111.3 83 69.9
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 7.2e-23 111.3 83 69.9
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.6e-22 110.2 68 75.0
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.1e-22 109.8 81 70.4
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 2.7e-22 109.4 80 62.5
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 2.7e-22 109.4 80 65.0
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 2.7e-22 109.4 76 65.8
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.7e-22 109.4 81 64.2
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 2.7e-22 109.4 81 64.2
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.7e-22 109.4 77 64.9
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.7e-22 109.4 78 65.4
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 3.6e-22 109.0 81 63.0
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 3.6e-22 109.0 81 66.7
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.6e-22 109.0 81 64.2
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 3.6e-22 109.0 77 61.0
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 4.7e-22 108.6 81 63.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.7e-22 108.6 77 62.3
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 6.1e-22 108.2 81 66.7
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 6.1e-22 108.2 81 66.7
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.1e-22 108.2 81 63.0
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 6.1e-22 108.2 81 64.2
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 6.1e-22 108.2 81 64.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.0e-22 107.8 81 63.0
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 8.0e-22 107.8 74 64.9
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 8.0e-22 107.8 81 63.0
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 8.0e-22 107.8 79 64.6
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 1.0e-21 107.5 80 65.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.0e-21 107.5 81 69.1
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.0e-21 107.5 74 71.6
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.0e-21 107.5 79 65.8
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.0e-21 107.5 79 64.6
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 1.4e-21 107.1 82 65.9
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.4e-21 107.1 81 63.0
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.4e-21 107.1 87 57.5
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.8e-21 106.7 79 64.6
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.3e-21 106.3 83 68.7
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 2.3e-21 106.3 53 84.9
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.0e-21 105.9 97 55.7
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 4.0e-21 105.5 104 51.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 4.0e-21 105.5 81 60.5
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 4.0e-21 105.5 83 61.4
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 5.2e-21 105.1 76 60.5
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 8.8e-21 104.4 79 62.0
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-20 104.0 78 60.3
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.2e-20 104.0 72 68.1
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.2e-20 104.0 69 71.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.5e-20 103.6 73 63.0
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.0e-20 103.2 79 62.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.4e-20 102.4 56 78.6
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.4e-20 102.4 80 62.5
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 3.4e-20 102.4 77 63.6
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 3.4e-20 102.4 79 64.6
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.4e-20 102.1 49 87.8
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.4e-20 102.1 51 86.3
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 5.7e-20 101.7 77 64.9
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 7.5e-20 101.3 56 78.6
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 7.5e-20 101.3 53 83.0
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 9.8e-20 100.9 87 58.6
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 9.8e-20 100.9 81 58.0
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.7e-19 100.1 49 87.8
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.2e-19 99.8 72 62.5
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.2e-19 99.8 49 85.7
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 3.7e-19 99.0 70 68.6
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 3.7e-19 99.0 74 60.8
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 4.9e-19 98.6 59 69.5
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 4.9e-19 98.6 49 83.7
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 6.3e-19 98.2 72 62.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.3e-19 98.2 75 61.3
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 6.3e-19 98.2 49 83.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.3e-19 97.8 74 60.8
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.3e-19 97.8 74 60.8
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 8.3e-19 97.8 102 50.0
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.1e-18 97.4 72 62.5
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.1e-18 97.4 59 69.5
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.1e-18 97.4 69 66.7
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.1e-18 97.4 53 77.4
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.1e-18 97.4 59 72.9
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.1e-18 97.4 52 78.8
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.4e-18 97.1 69 63.8
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.4e-18 97.1 76 60.5
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.4e-18 97.1 76 60.5
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.4e-18 97.1 76 60.5
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.4e-18 97.1 66 71.2
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.8e-18 96.7 81 55.6
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.8e-18 96.7 50 80.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 2.4e-18 96.3 59 67.8
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 2.4e-18 96.3 59 67.8
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.4e-18 96.3 76 63.2
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.1e-18 95.9 49 81.6
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.1e-18 95.9 72 61.1
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.1e-18 95.5 49 81.6
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.1e-18 95.5 49 81.6
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 4.1e-18 95.5 129 42.6
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 4.1e-18 95.5 49 79.6
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 5.4e-18 95.1 49 81.6
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.4e-18 95.1 49 79.6
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.4e-18 95.1 58 74.1
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 5.4e-18 95.1 76 55.3
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 7.0e-18 94.7 76 59.2
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 7.0e-18 94.7 76 59.2
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 7.0e-18 94.7 72 62.5
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 7.0e-18 94.7 72 62.5
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.2e-17 94.0 49 81.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 1.6e-17 93.6 47 80.9
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 2.7e-17 92.8 67 59.7
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 2.7e-17 92.8 76 57.9
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.5e-17 92.4 46 87.0
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 5.9e-17 91.7 47 80.9
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 7.7e-17 91.3 74 58.1
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.0e-16 90.9 46 84.8
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.3e-16 90.5 49 77.6
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.3e-16 90.5 82 53.7
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.7e-16 90.1 65 60.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.9e-16 89.4 43 88.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 8.6e-16 87.8 72 55.6
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.1e-15 87.4 46 80.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.1e-15 87.4 46 80.4
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.1e-15 87.4 74 62.2
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.8e-13 80.1 42 76.2
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.0e-13 79.0 43 74.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.7e-11 73.6 53 67.9
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.0e-09 66.6 49 65.3
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 3.9e-08 62.4 64 48.4
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 6.2e-06 55.1 26 80.8


User provided reference genes

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