Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 4.4e-127 458.0 232 100.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 3.0e-88 328.9 242 66.1
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 5.2e-88 328.2 229 71.2
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.4e-86 321.2 232 69.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 4.6e-84 315.1 230 65.7
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.0e-83 313.9 238 67.6
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 5.0e-83 311.6 243 65.8
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.1e-82 310.5 231 68.4
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.1e-82 310.5 227 65.2
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 7.3e-82 307.8 235 64.7
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 9.5e-82 307.4 233 66.1
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.6e-81 306.6 245 63.3
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 3.6e-81 305.4 237 66.7
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.8e-80 303.1 240 65.0
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.3e-80 302.8 245 62.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 2.3e-80 302.8 253 60.9
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 2.3e-80 302.8 240 65.0
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.3e-80 302.8 240 65.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 8.9e-80 300.8 237 63.7
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.5e-79 300.1 233 62.2
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.4e-79 298.9 233 63.9
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 7.5e-79 297.7 232 65.1
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 7.5e-79 297.7 232 65.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 7.5e-79 297.7 234 65.4
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.3e-78 297.0 232 65.1
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.7e-78 295.4 232 63.4
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 4.9e-78 295.0 242 61.6
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.1e-77 293.9 242 61.2
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.9e-77 293.1 231 63.6
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.9e-77 293.1 226 64.6
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 3.2e-77 292.4 239 61.5
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 4.1e-77 292.0 235 63.4
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 7.0e-77 291.2 237 61.2
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 4.6e-76 288.5 234 63.7
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 4.6e-76 288.5 230 63.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 6.0e-76 288.1 235 64.3
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 6.0e-76 288.1 235 64.3
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 6.0e-76 288.1 228 60.5
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.3e-75 287.0 235 65.1
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.7e-75 286.6 231 64.5
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.3e-75 286.2 232 62.5
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 3.9e-75 285.4 243 60.9
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 3.9e-75 285.4 234 62.4
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 5.0e-75 285.0 227 62.6
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 6.6e-75 284.6 232 62.1
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 6.6e-75 284.6 244 61.5
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 8.6e-75 284.3 231 62.8
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.5e-74 282.7 236 62.7
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.3e-74 282.3 231 63.2
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 4.3e-74 282.0 234 62.0
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 4.3e-74 282.0 231 61.5
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 5.6e-74 281.6 245 60.8
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 5.6e-74 281.6 241 61.8
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.1e-73 279.6 233 61.4
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.8e-73 279.3 231 61.0
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 6.2e-73 278.1 242 59.9
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 6.2e-73 278.1 234 61.1
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 8.1e-73 277.7 244 59.0
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 8.1e-73 277.7 236 61.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 8.1e-73 277.7 231 61.0
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.4e-72 276.9 231 62.3
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.4e-72 276.9 242 59.5
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.4e-72 276.9 232 59.9
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 3.1e-72 275.8 242 59.5
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 4.0e-72 275.4 244 58.6
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 6.8e-72 274.6 243 58.4
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.2e-71 273.9 230 60.9
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 2.0e-71 273.1 234 60.7
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.6e-71 272.7 243 58.0
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 7.5e-71 271.2 243 57.6
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.9e-70 269.2 243 58.0
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.1e-69 267.3 236 58.9
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.4e-69 266.9 254 55.9
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.9e-69 266.5 252 52.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.4e-69 266.2 237 57.8
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 2.4e-69 266.2 254 56.3
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 9.2e-69 264.2 249 56.2
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.6e-68 263.5 254 54.7
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.0e-67 259.2 230 58.7
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.3e-66 255.8 240 56.2
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.8e-64 250.0 255 52.5
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 2.4e-64 249.6 345 43.8
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.0e-63 246.5 226 57.1
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.3e-62 243.8 236 56.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 7.1e-61 238.0 220 57.7
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.3e-59 233.8 222 55.9
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 9.6e-58 227.6 233 51.9
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 9.6e-58 227.6 233 51.9
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.6e-57 226.9 257 49.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 2.1e-57 226.5 226 54.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.7e-57 225.3 233 51.5
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 8.1e-57 224.6 189 59.8
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 9.0e-56 221.1 241 49.8
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 7.6e-55 218.0 222 49.5
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 7.6e-55 218.0 243 48.6
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.2e-54 216.5 187 56.7
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 3.8e-54 215.7 222 49.1
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.9e-54 215.3 231 50.6
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.9e-53 213.4 236 50.8
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.2e-52 210.7 234 50.0
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-52 209.5 228 48.7
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-51 206.8 222 48.6
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-49 200.3 224 47.8
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 1.6e-49 200.3 224 47.8
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.4e-47 192.6 234 46.2
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 3.4e-47 192.6 236 49.6
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-44 184.1 183 50.8
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.5e-42 176.4 133 66.9
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 4.3e-42 175.6 192 50.5
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 5.6e-42 175.3 161 52.8
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 5.6e-42 175.3 161 52.8
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.5e-39 167.2 141 62.4
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 2.9e-38 162.9 223 42.2
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 7.9e-36 154.8 125 61.6
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 4.3e-34 149.1 226 36.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 7.4e-34 148.3 230 42.2
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 8.4e-30 134.8 232 35.3
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 4.2e-29 132.5 126 56.3
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 4.2e-29 132.5 229 36.7
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 8.7e-27 124.8 231 33.8
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 7.6e-23 111.7 89 60.7
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 8.5e-22 108.2 109 52.3
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-21 105.5 100 58.0
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.5e-15 87.4 176 31.8
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 2.5e-13 80.1 141 34.8
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 5.5e-13 79.0 120 37.5
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 5.5e-13 79.0 120 37.5
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 2.1e-12 77.0 120 37.5
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-12 76.6 120 36.7
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 2.7e-12 76.6 120 36.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.0e-11 73.2 67 53.7
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 6.7e-11 72.0 125 36.0
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 1.5e-10 70.9 201 32.8
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 4.4e-10 69.3 38 78.9
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 5.3e-08 62.4 279 25.8
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 7.0e-08 62.0 57 52.6
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-07 60.5 91 42.9
HanXRQChr09g0239031 Helianthus annuus HOM05D005295 ORTHO05D005962 2.6e-07 60.1 47 63.8
HanXRQChr11g0352521 Helianthus annuus HOM05D005295 ORTHO05D005962 2.6e-07 60.1 47 63.8
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.9e-06 56.6 35 74.3
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.9e-06 56.6 35 74.3
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.9e-06 56.6 35 74.3
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.9e-06 56.6 35 74.3
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.9e-06 56.6 35 74.3
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 2.9e-06 56.6 65 53.8
RcHm_v2.0_Chr2g0093141 Rosa chinensis HOM05D000490 ORTHO05D000785 6.5e-06 55.5 114 29.8
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 8.5e-06 55.1 35 71.4


User provided reference genes

Program Settings