Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 0.0e+00 1342.8 658 100.0
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.6e-193 679.5 603 58.0
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.5e-190 669.1 624 56.9
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 1.7e-189 666.8 583 59.0
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 3.6e-187 659.1 591 58.0
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 2.4e-186 656.4 607 57.5
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 1.6e-182 643.7 618 54.7
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 6.5e-176 621.7 661 51.7
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 4.2e-175 619.0 619 53.8
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 1.0e-168 597.8 646 49.8
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 1.7e-168 597.0 601 53.4
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 6.1e-166 588.6 602 51.5
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 5.1e-165 585.5 671 48.3
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 8.7e-165 584.7 646 50.2
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 1.5e-164 583.9 593 53.5
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 1.8e-162 577.0 589 51.8
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 2.1e-158 563.5 586 50.7
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 2.1e-158 563.5 626 49.2
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 1.0e-157 561.2 642 49.4
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.4e-157 560.8 600 49.8
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.7e-155 553.9 582 50.5
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.4e-154 550.8 601 48.8
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 4.1e-154 549.3 610 49.0
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 6.9e-154 548.5 588 50.0
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 2.0e-153 547.0 586 51.0
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 3.4e-153 546.2 628 46.8
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 3.4e-153 546.2 619 49.8
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 4.5e-153 545.8 601 48.8
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.0e-152 544.7 593 49.9
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.2e-150 537.7 587 48.4
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 1.0e-149 534.6 592 49.3
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 1.8e-149 533.9 653 45.8
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.3e-149 533.5 588 47.8
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 5.1e-149 532.3 600 47.0
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 8.8e-149 531.6 647 47.1
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 8.8e-149 531.6 600 47.0
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 3.3e-148 529.6 588 48.1
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 3.3e-148 529.6 621 48.5
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 3.7e-147 526.2 586 48.1
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 8.2e-147 525.0 604 48.3
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 1.1e-146 524.6 587 46.7
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 3.1e-146 523.1 624 46.2
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 5.3e-146 522.3 594 47.8
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 2.9e-144 516.5 586 46.6
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 3.8e-144 516.2 601 47.8
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 2.5e-143 513.5 618 47.4
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 5.5e-143 512.3 626 45.7
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 4.7e-142 509.2 605 46.9
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.0e-141 508.1 618 47.2
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 1.5e-140 504.2 654 44.5
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.3e-139 501.1 593 46.4
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 3.7e-139 499.6 584 47.3
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 6.3e-139 498.8 592 46.3
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.1e-135 488.0 591 45.9
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 1.9e-135 487.3 613 45.0
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 3.2e-135 486.5 598 45.3
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 2.7e-134 483.4 592 45.3
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 1.4e-133 481.1 440 56.8
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 1.5e-132 477.6 606 44.7
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 4.8e-131 472.6 509 48.7
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 8.3e-131 471.9 601 45.9
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.4e-130 471.1 616 42.9
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.2e-129 468.0 595 42.4
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 2.7e-129 466.8 618 44.5
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 4.5e-129 466.1 603 43.6
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 7.7e-129 465.3 581 45.1
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.2e-124 451.4 627 45.1
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 1.5e-124 451.1 591 45.0
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 1.1e-119 434.9 621 40.1
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 3.3e-119 433.3 559 43.3
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 1.7e-115 421.0 592 41.2
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 4.9e-115 419.5 537 44.1
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 3.2e-114 416.8 680 37.9
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 1.2e-113 414.8 512 44.9
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 2.0e-113 414.1 606 40.1
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.1e-111 408.3 512 44.9
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 3.6e-110 403.3 595 39.8
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 3.4e-108 396.7 519 42.6
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 7.5e-100 369.0 456 44.5
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 1.0e-96 358.6 469 45.0
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 5.6e-95 352.8 582 38.0
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 2.1e-94 350.9 578 37.5
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 2.3e-93 347.4 587 37.5
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 3.8e-91 340.1 278 58.3
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 7.3e-87 325.9 603 34.3
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 9.6e-87 325.5 452 43.4
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.6e-86 324.7 598 35.1
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 1.8e-85 321.2 604 34.8
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 3.1e-85 320.5 625 34.2
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 8.9e-85 318.9 602 35.4
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 8.9e-85 318.9 618 35.3
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 4.4e-84 316.6 568 36.1
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 5.8e-84 316.2 588 35.9
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 7.6e-84 315.8 585 35.4
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 7.6e-84 315.8 599 35.4
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 2.2e-83 314.3 593 35.6
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 2.2e-83 314.3 593 35.6
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 2.9e-83 313.9 442 42.3
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-82 312.0 588 35.7
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 7.1e-82 309.3 596 35.7
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 8.7e-80 302.4 573 35.4
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 4.3e-79 300.1 227 61.7
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 2.0e-76 291.2 566 35.9
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 2.9e-75 287.3 431 42.2
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 3.5e-73 280.4 445 39.6
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.9e-71 274.6 256 52.3
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 9.6e-71 272.3 551 33.8
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 1.3e-70 271.9 225 57.8
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 2.8e-70 270.8 574 31.4
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 6.9e-69 266.2 303 47.5
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 6.9e-69 266.2 453 37.3
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.4e-66 258.5 492 33.3
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 7.6e-60 236.1 393 38.4
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 6.3e-54 216.5 394 36.0
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 9.0e-53 212.6 303 43.6
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 2.5e-50 204.5 270 44.8
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 3.6e-49 200.7 458 32.5
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 4.6e-49 200.3 282 41.1
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 5.7e-47 193.4 160 58.1
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 2.2e-46 191.4 168 55.4
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 3.7e-46 190.7 181 53.6
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 1.5e-44 185.3 529 30.1
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 1.7e-43 181.8 168 51.8
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 2.9e-43 181.0 581 25.0
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 4.6e-41 173.7 603 26.5
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 7.9e-41 172.9 151 53.6
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 2.3e-40 171.4 243 43.6
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 8.2e-38 162.9 237 38.8
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 1.1e-37 162.5 223 39.5
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 5.3e-37 160.2 159 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 3.9e-32 144.1 469 27.7
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 1.5e-31 142.1 139 48.9
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 6.1e-25 120.2 162 42.6
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-22 111.7 136 41.2
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 7.0e-21 106.7 347 27.7
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 5.0e-19 100.5 464 24.8
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 6.8e-16 90.1 101 50.5
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.1e-13 81.3 64 51.6
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 3.1e-13 81.3 229 28.8
Atru.chr2.139 Acer truncatum HOM05D004843 ORTHO05D005833 1.9e-10 72.0 114 43.9
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 2.3e-08 65.1 90 44.4
Haze_09369 Corylus avellana HOM05D004843 ORTHO05D164047 3.0e-08 64.7 44 59.1
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 2.0e-07 62.0 78 46.2
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 2.6e-07 61.6 146 30.1
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 7.5e-07 60.1 143 29.4
HPP92_010834 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.7e-06 58.9 83 38.6


User provided reference genes

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