Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.6e-230 802.4 404 100.0
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.5e-87 327.4 406 52.7
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.0e-86 324.7 406 52.0
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.0e-82 310.5 343 54.2
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 8.2e-81 305.1 401 50.6
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.2e-78 297.0 405 49.9
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 2.9e-78 296.6 418 49.3
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.7e-76 290.0 405 47.9
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 2.7e-68 263.5 426 45.5
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.6e-68 263.1 433 44.3
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.0e-67 260.0 344 48.8
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 1.2e-66 258.1 337 49.3
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 9.7e-66 255.0 398 46.2
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 2.2e-65 253.8 379 47.0
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 2.2e-65 253.8 403 46.7
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 2.8e-65 253.4 404 45.0
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.8e-65 253.4 438 42.5
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 1.1e-64 251.5 428 42.8
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.4e-64 251.1 410 45.6
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.4e-64 250.4 404 44.8
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 3.1e-64 250.0 425 43.8
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.0e-63 247.3 437 42.8
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.3e-62 244.6 429 41.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.8e-62 243.0 412 45.6
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.0e-62 242.7 413 44.3
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 8.5e-62 241.9 399 44.4
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 1.1e-61 241.5 409 46.0
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.5e-61 241.1 425 43.1
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 2.7e-60 236.9 414 44.4
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.6e-60 236.5 411 44.0
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.0e-59 235.0 401 45.6
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 5.2e-59 232.6 403 41.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 5.7e-58 229.2 406 43.1
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.7e-57 226.5 411 43.3
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.6e-55 221.1 416 42.1
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.6e-55 221.1 415 44.3
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 7.7e-55 218.8 399 43.6
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 1.5e-53 214.5 276 55.4
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 5.5e-53 212.6 415 41.9
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 4.7e-52 209.5 232 53.9
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 8.0e-52 208.8 408 40.9
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 4.0e-51 206.5 403 38.2
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 6.8e-51 205.7 401 42.4
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 1.5e-50 204.5 403 42.7
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 2.6e-50 203.8 343 42.3
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 5.7e-50 202.6 406 39.9
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 7.5e-50 202.2 399 40.9
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 7.5e-50 202.2 407 40.8
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 2.2e-49 200.7 404 40.8
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.2e-49 200.7 402 39.8
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.1e-48 198.4 431 36.4
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 3.1e-48 196.8 422 39.6
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 4.1e-48 196.4 313 44.1
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 9.2e-48 195.3 397 41.1
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 9.2e-48 195.3 424 37.7
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.2e-47 194.9 411 40.4
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 3.5e-47 193.4 407 39.6
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 7.8e-47 192.2 401 41.1
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 5.0e-46 189.5 410 40.5
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 6.6e-46 189.1 411 38.4
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 6.6e-46 189.1 358 42.2
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 8.6e-46 188.7 317 42.3
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.1e-45 188.3 408 41.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 3.3e-45 186.8 398 40.5
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 9.5e-45 185.3 401 37.7
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.2e-44 184.9 370 40.3
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.6e-44 184.5 404 40.8
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.6e-44 184.5 416 40.9
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.1e-44 184.1 418 39.7
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.8e-43 181.0 255 45.5
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 5.2e-43 179.5 397 38.5
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.4e-42 176.8 396 37.9
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 7.5e-42 175.6 330 40.0
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 4.9e-41 172.9 408 35.5
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 1.2e-39 168.3 400 37.8
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 2.0e-39 167.5 310 44.8
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.0e-39 167.5 412 36.7
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.7e-39 167.2 393 36.4
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 4.6e-39 166.4 411 36.7
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 6.0e-39 166.0 431 34.6
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.0e-38 165.2 261 47.1
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 2.3e-38 164.1 422 35.8
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.1e-37 161.8 425 36.9
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 1.9e-37 161.0 350 37.4
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 4.3e-37 159.8 401 35.7
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.1e-36 157.5 421 38.7
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 4.7e-36 156.4 393 36.9
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 2.3e-35 154.1 401 33.7
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 5.2e-35 152.9 416 35.8
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.2e-34 151.8 411 35.0
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.0e-34 151.0 409 36.2
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 2.6e-34 150.6 400 35.8
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 5.8e-34 149.4 268 40.3
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.9e-33 147.1 209 44.5
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 3.2e-32 143.7 230 44.8
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 4.1e-32 143.3 402 38.1
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 1.6e-31 141.4 268 39.6
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 3.5e-31 140.2 390 33.6
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.8e-31 139.0 389 32.9
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 2.3e-30 137.5 403 36.2
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 3.9e-30 136.7 329 36.5
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 9.5e-29 132.1 230 46.1
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.2e-28 131.7 420 31.2
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.1e-27 128.6 419 32.5
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.5e-26 124.8 318 37.1
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.2e-25 120.9 395 32.7
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.9e-25 120.6 292 36.6
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 2.1e-23 114.4 271 38.7
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 4.6e-23 113.2 418 32.5
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 6.0e-23 112.8 283 34.3
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 3.9e-22 110.2 322 33.9
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 8.6e-22 109.0 414 32.6
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.9e-21 107.8 218 36.2
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.3e-21 106.7 251 37.1
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 4.3e-21 106.7 287 34.1
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 7.3e-21 105.9 248 34.7
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 3.4e-18 97.1 307 32.2
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.4e-18 96.7 267 33.0
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 1.3e-17 95.1 209 37.8
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.9e-17 94.0 303 30.4
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 7.1e-16 89.4 325 32.6
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.6e-15 88.2 218 37.6
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.6e-15 88.2 325 32.3
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.7e-15 87.4 408 30.4
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 4.6e-15 86.7 229 34.5
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.5e-13 80.9 308 31.2
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 2.4e-11 74.3 147 40.1
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 2.4e-11 74.3 409 29.8
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 3.1e-11 73.9 186 35.5
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 1.2e-10 72.0 264 32.6
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 1.5e-10 71.6 265 32.8
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.4e-10 70.1 225 30.7
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 5.8e-10 69.7 121 41.3
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 2.2e-09 67.8 392 28.8
Ca_00413_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 7.1e-08 62.8 389 27.5
Ca_30157_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 7.1e-08 62.8 389 27.5
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 7.1e-08 62.8 190 27.9
Medtr2g015330 Medicago truncatula HOM05D009670 ORTHO05D010890 3.5e-07 60.5 288 30.6


User provided reference genes

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