Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 6.5e-27 123.2 59 100.0
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 2.4e-13 78.2 50 70.0
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 2.4e-13 78.2 59 66.1
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 1.5e-12 75.5 62 64.5
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 1.5e-12 75.5 57 66.7
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 2.0e-12 75.1 59 66.1
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 5.9e-12 73.6 61 65.6
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 7.7e-12 73.2 55 63.6
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 7.7e-12 73.2 61 63.9
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 7.7e-12 73.2 46 76.1
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 1.0e-11 72.8 60 61.7
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 1.0e-11 72.8 49 71.4
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 2.9e-11 71.2 52 69.2
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 1.9e-10 68.6 53 67.9
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 1.9e-10 68.6 41 70.7
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 2.5e-10 68.2 49 67.3
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 4.2e-10 67.4 55 58.2
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 4.2e-10 67.4 60 58.3
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 7.2e-10 66.6 49 63.3
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 9.4e-10 66.2 44 68.2
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 9.4e-10 66.2 50 60.0
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 1.6e-09 65.5 43 62.8
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 2.1e-09 65.1 44 70.5
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 3.6e-09 64.3 62 51.6
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 3.6e-09 64.3 49 61.2
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 3.6e-09 64.3 60 56.7
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 3.6e-09 64.3 54 57.4
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 4.7e-09 63.9 58 60.3
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 6.1e-09 63.5 45 64.4
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 6.1e-09 63.5 36 72.2
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 6.1e-09 63.5 47 61.7
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 6.1e-09 63.5 43 65.1
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 7.9e-09 63.2 45 64.4
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 7.9e-09 63.2 44 68.2
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 1.0e-08 62.8 59 55.9
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 1.0e-08 62.8 61 50.8
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.0e-08 62.8 44 65.9
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.0e-08 62.8 44 65.9
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 1.0e-08 62.8 44 65.9
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 1.4e-08 62.4 36 69.4
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 1.4e-08 62.4 60 55.0
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 2.3e-08 61.6 36 69.4
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 2.3e-08 61.6 45 60.0
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 3.0e-08 61.2 48 58.3
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 3.9e-08 60.8 51 54.9
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 8.8e-08 59.7 41 68.3
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 1.1e-07 59.3 48 56.2
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 1.1e-07 59.3 50 54.0
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 2.0e-07 58.5 50 50.0
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 2.0e-07 58.5 50 50.0
Nn1g04456 Nelumbo nucifera HOM05D008148 ORTHO05D010295 2.6e-07 58.2 46 58.7
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 3.3e-07 57.8 59 49.2
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 5.7e-07 57.0 63 52.4
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 1.7e-06 55.5 41 63.4
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 1.7e-06 55.5 59 49.2
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 2.2e-06 55.1 51 54.9
MBI06_g08612_MAGBIO Magnolia biondii HOM05D008148 ORTHO05D010295 2.2e-06 55.1 53 54.7
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 2.2e-06 55.1 48 54.2
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 2.2e-06 55.1 37 67.6
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 2.8e-06 54.7 59 45.8
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 3.7e-06 54.3 43 53.5
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 4.8e-06 53.9 40 52.5


User provided reference genes

Program Settings