Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.4e-281 972.2 471 100.0
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.5e-232 808.1 472 81.8
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.6e-229 798.1 474 81.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.4e-225 786.2 475 80.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.4e-225 785.4 474 78.9
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.3e-223 779.6 474 78.9
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.2e-221 773.1 472 78.2
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.6e-221 772.7 476 76.9
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 8.9e-220 766.9 473 78.0
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-218 763.1 476 75.8
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.1e-217 760.0 476 75.8
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.4e-217 758.8 476 76.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 7.0e-217 757.3 474 76.6
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.2e-216 756.5 472 76.3
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.0e-215 753.4 475 75.6
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.3e-215 753.1 478 74.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.9e-214 749.2 480 75.4
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.3e-214 748.0 478 74.3
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 2.1e-213 745.7 483 74.3
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-212 743.4 477 75.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.1e-212 743.4 473 74.6
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.8e-212 742.7 479 74.3
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.8e-212 742.7 478 74.5
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 2.3e-212 742.3 474 74.9
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 5.2e-212 741.1 480 75.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-211 739.6 475 75.8
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.5e-211 739.6 477 74.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.6e-211 738.8 475 75.8
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.4e-211 738.0 481 74.6
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 7.5e-211 737.3 479 74.9
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.5e-211 737.3 474 75.3
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 2.2e-210 735.7 472 74.4
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 3.7e-210 734.9 476 74.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-209 733.4 474 74.7
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.4e-209 733.0 481 74.2
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 3.2e-209 731.9 498 71.1
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 4.1e-209 731.5 476 75.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 3.5e-208 728.4 476 75.4
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 3.5e-208 728.4 481 73.6
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.3e-207 726.5 480 74.2
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.7e-207 726.1 478 74.1
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.7e-207 726.1 515 69.3
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 6.6e-207 724.2 517 68.7
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 6.6e-207 724.2 480 74.2
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 6.6e-207 724.2 475 74.1
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 8.6e-207 723.8 515 69.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 8.6e-207 723.8 515 68.9
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.1e-206 723.4 432 79.4
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.6e-205 719.5 525 67.6
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 2.1e-205 719.2 480 73.5
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 8.1e-205 717.2 484 71.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 8.1e-205 717.2 474 72.4
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.1e-204 716.8 473 71.9
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.8e-204 716.1 479 73.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 6.8e-204 714.1 515 68.9
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.0e-203 712.6 479 73.3
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 7.6e-203 710.7 474 72.2
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.7e-202 709.5 541 65.1
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.2e-202 709.1 476 73.7
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 3.8e-202 708.4 477 73.4
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.4e-201 706.4 498 69.3
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.2e-201 705.3 474 73.6
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 7.1e-201 704.1 516 67.6
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.6e-200 703.0 486 73.5
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.6e-200 703.0 478 72.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 4.6e-200 701.4 481 72.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 7.8e-200 700.7 480 71.5
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.0e-199 698.7 476 71.0
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.6e-199 697.6 476 70.0
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 3.3e-198 695.3 476 71.2
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.1e-196 688.7 515 68.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 7.6e-195 684.1 476 69.3
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.7e-194 682.9 539 63.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.9e-194 682.2 496 69.8
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.4e-194 680.6 513 67.8
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 5.4e-193 677.9 480 69.8
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.1e-192 676.0 473 69.8
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.8e-192 674.1 433 74.8
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 8.7e-191 670.6 477 69.4
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.3e-190 668.7 386 82.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 6.9e-188 661.0 473 68.7
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.8e-187 657.9 435 72.9
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.1e-185 653.7 485 67.4
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 7.1e-185 651.0 474 66.7
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.5e-184 648.7 485 66.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.3e-183 646.0 476 65.5
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 8.7e-183 644.0 478 65.9
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.1e-182 643.7 479 66.8
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.1e-182 643.7 478 65.9
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.1e-182 643.7 386 79.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.6e-181 639.8 438 71.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.4e-180 636.7 480 65.4
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.2e-179 633.6 473 66.0
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.5e-179 633.3 481 65.3
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 7.6e-179 630.9 386 78.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.7e-178 629.8 474 64.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.7e-176 622.5 480 66.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 4.6e-176 621.7 476 64.5
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.0e-175 619.0 473 64.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 8.7e-175 617.5 484 64.3
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.1e-174 617.1 404 75.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.9e-174 616.3 476 63.9
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.3e-174 615.1 390 75.6
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.3e-173 613.6 476 63.7
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.3e-173 613.6 473 63.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 6.2e-173 611.3 475 62.9
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.1e-172 610.5 475 62.9
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 4.0e-172 608.6 475 63.4
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 5.3e-172 608.2 473 62.6
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 5.3e-172 608.2 474 63.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-171 607.1 475 62.3
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.2e-171 607.1 475 62.3
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.0e-171 606.3 477 62.5
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.2e-170 602.8 475 63.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 2.3e-167 592.8 475 61.5
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.1e-164 583.9 435 68.7
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 3.6e-160 568.9 435 66.4
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 7.9e-160 567.8 394 71.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.9e-158 563.1 394 69.3
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.3e-157 560.5 346 78.3
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 3.7e-157 558.9 436 64.0
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.8e-157 558.5 455 61.5
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.5e-155 552.0 491 55.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 6.5e-154 548.1 497 55.5
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.6e-152 543.5 290 87.2
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.3e-150 535.8 508 54.3
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 6.3e-149 531.6 433 60.3
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.9e-143 512.3 283 83.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.1e-142 510.8 475 55.4
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 7.0e-140 501.5 460 55.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.3e-138 497.3 287 80.5
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.8e-133 478.8 306 69.9
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.1e-128 463.4 300 71.7
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.4e-119 434.1 400 54.0
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 5.2e-119 432.2 287 69.3
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 5.4e-116 422.2 528 44.7
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.4e-116 422.2 558 44.1
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.2e-112 411.0 294 67.7
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.4e-110 402.5 304 61.5
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 5.0e-106 389.0 295 68.1
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 5.6e-105 385.6 388 49.2
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 9.8e-102 374.8 537 41.0
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.5e-86 324.3 373 48.8
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.6e-72 277.7 431 40.6
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-68 265.0 205 63.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.3e-66 257.3 214 61.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.9e-52 211.1 179 60.9
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 9.0e-47 192.2 192 58.3
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-46 191.4 139 69.1
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.7e-40 171.4 95 82.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 4.8e-40 169.9 187 51.3
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-39 168.7 144 58.3
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-39 168.7 144 58.3
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.8e-39 167.9 93 81.7
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-38 164.9 95 78.9
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.6e-38 164.1 126 67.5
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.0e-37 162.2 178 49.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.9e-37 160.6 127 54.3
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 2.3e-34 151.0 86 80.2
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 2.3e-34 151.0 86 80.2
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.9e-34 150.2 108 67.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.2e-32 144.4 150 49.3
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 7.7e-30 136.0 136 58.1
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.5e-28 131.7 165 43.0
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 6.1e-19 99.8 72 63.9
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.7e-13 81.6 45 77.8


User provided reference genes

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