Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-53 212.6 101 100.0
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.1e-45 186.4 91 96.7
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.1e-42 173.7 91 89.0
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.3e-38 160.6 91 82.4
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 1.9e-34 149.1 91 76.9
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.2e-33 146.4 91 65.9
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 3.5e-33 144.8 89 73.0
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 3.9e-32 141.4 92 68.5
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 5.1e-32 141.0 91 72.5
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.1e-31 139.8 87 72.4
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 3.3e-31 138.3 91 69.2
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 9.7e-31 136.7 91 65.9
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 9.7e-31 136.7 91 67.0
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.3e-30 136.3 90 66.7
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.2e-30 135.6 86 70.9
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 2.2e-30 135.6 91 64.8
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 2.8e-30 135.2 91 69.2
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.1e-29 133.3 91 65.9
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 1.8e-29 132.5 89 65.2
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 2.4e-29 132.1 91 64.8
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 3.1e-29 131.7 94 64.9
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.1e-29 131.3 91 64.8
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 6.9e-29 130.6 91 61.5
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 6.9e-29 130.6 91 61.5
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 1.2e-28 129.8 88 64.8
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 1.2e-28 129.8 91 62.6
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.2e-28 129.8 91 63.7
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 1.5e-28 129.4 89 61.8
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.5e-28 129.4 88 65.9
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 2.0e-28 129.0 91 65.9
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.0e-28 129.0 91 60.4
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 2.6e-28 128.6 91 60.4
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 3.4e-28 128.3 91 61.5
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.4e-28 128.3 88 64.8
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 3.4e-28 128.3 90 66.7
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 7.7e-28 127.1 90 62.2
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 7.7e-28 127.1 85 65.9
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 7.7e-28 127.1 94 64.9
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.0e-27 126.7 90 61.1
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 1.3e-27 126.3 91 63.7
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.3e-27 126.3 85 67.1
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.3e-27 126.3 81 69.1
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.3e-27 126.3 88 61.4
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 1.7e-27 125.9 90 64.4
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.2e-27 125.6 91 61.5
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.9e-27 125.2 90 61.1
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 3.8e-27 124.8 90 60.0
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 5.0e-27 124.4 84 61.9
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 6.5e-27 124.0 90 61.1
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 6.5e-27 124.0 90 61.1
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 6.5e-27 124.0 90 66.7
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 8.5e-27 123.6 91 62.6
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 8.5e-27 123.6 80 66.2
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.1e-26 123.2 89 59.6
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.4e-26 122.9 86 65.1
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 1.9e-26 122.5 88 60.2
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.9e-26 122.5 90 65.6
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.9e-26 122.5 90 64.4
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 2.5e-26 122.1 91 60.4
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.5e-26 122.1 101 54.5
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 3.2e-26 121.7 89 62.9
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.2e-26 121.7 83 63.9
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 4.2e-26 121.3 91 58.2
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 4.2e-26 121.3 90 61.1
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 5.5e-26 120.9 91 64.8
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 9.4e-26 120.2 86 62.8
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 9.4e-26 120.2 85 57.6
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.2e-25 119.8 89 59.6
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 1.2e-25 119.8 94 56.4
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 1.2e-25 119.8 91 64.8
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 2.7e-25 118.6 91 59.3
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 4.6e-25 117.9 84 58.3
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 4.6e-25 117.9 91 59.3
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.1e-25 117.5 88 55.7
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 7.9e-25 117.1 85 63.5
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.9e-25 117.1 89 59.6
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.9e-25 117.1 89 59.6
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 1.4e-24 116.3 92 58.7
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.4e-24 116.3 88 56.8
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.8e-24 115.9 88 58.0
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 3.0e-24 115.2 83 63.9
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 3.9e-24 114.8 85 62.4
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 5.1e-24 114.4 86 59.3
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 5.1e-24 114.4 84 59.5
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 5.1e-24 114.4 91 57.1
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 6.7e-24 114.0 91 59.3
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 6.7e-24 114.0 90 53.3
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 8.8e-24 113.6 91 59.3
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 8.8e-24 113.6 85 58.8
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 8.8e-24 113.6 91 54.9
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 1.1e-23 113.2 80 60.0
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.5e-23 112.8 84 56.0
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 2.0e-23 112.5 91 54.9
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.7e-23 110.9 91 52.7
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 7.4e-23 110.5 83 59.0
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 7.4e-23 110.5 83 59.0
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 7.4e-23 110.5 88 51.1
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.7e-22 109.4 85 60.0
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 2.2e-22 109.0 82 59.8
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 2.8e-22 108.6 85 54.1
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.8e-22 108.6 85 52.9
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 2.8e-22 108.6 85 55.3
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 3.7e-22 108.2 87 57.5
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 6.3e-22 107.5 85 57.6
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 6.3e-22 107.5 90 52.2
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.4e-21 106.3 93 51.6
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.4e-21 106.3 89 53.9
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 1.4e-21 106.3 88 53.4
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 1.8e-21 105.9 88 53.4
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 1.8e-21 105.9 86 55.8
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 3.1e-21 105.1 80 58.8
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 3.1e-21 105.1 82 57.3
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.1e-21 104.8 92 50.0
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 6.9e-21 104.0 83 54.2
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 9.1e-21 103.6 88 55.7
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 9.1e-21 103.6 84 56.0
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.2e-20 103.2 88 52.3
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.2e-20 103.2 88 52.3
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 2.6e-20 102.1 88 52.3
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.4e-20 101.7 79 53.2
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 5.9e-20 100.9 92 54.3
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.9e-20 100.9 92 48.9
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 7.7e-20 100.5 92 53.3
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 7.7e-20 100.5 85 50.6
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.3e-19 99.8 85 51.8
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.3e-19 99.8 83 55.4
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 2.2e-19 99.0 88 51.1
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 2.9e-19 98.6 101 47.5
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 5.0e-19 97.8 85 52.9
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 8.5e-19 97.1 86 53.5
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 1.9e-18 95.9 78 51.3
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 1.9e-18 95.9 88 47.7
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.9e-18 95.9 83 49.4
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 2.5e-18 95.5 76 57.9
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 2.5e-18 95.5 89 52.8
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 1.6e-17 92.8 79 51.9
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.6e-17 91.7 76 51.3
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 7.9e-17 90.5 76 48.7
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 3.0e-16 88.6 83 49.4
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 6.7e-16 87.4 86 43.0
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 1.1e-15 86.7 83 47.0
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 3.3e-15 85.1 83 44.6
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.8e-14 82.0 87 42.5
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 3.7e-14 81.6 81 48.1
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.7e-14 81.6 78 50.0
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 1.4e-13 79.7 81 45.7
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 3.1e-13 78.6 81 45.7
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.6e-12 76.3 55 60.0
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 4.5e-12 74.7 76 46.1
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 4.5e-12 74.7 76 46.1
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 4.5e-12 74.7 76 46.1
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 5.9e-12 74.3 78 43.6
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.3e-11 73.2 83 42.2
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 2.9e-11 72.0 79 39.2
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 1.5e-10 69.7 83 38.6
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 1.5e-10 69.7 78 41.0
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 1.5e-10 69.7 78 41.0
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 4.2e-10 68.2 77 40.3
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 2.3e-08 62.4 87 37.9
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.7e-08 60.8 96 30.2
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 4.4e-07 58.2 86 38.4
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 7.5e-07 57.4 95 28.4
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.3e-06 56.6 96 32.3
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 1.3e-06 56.6 98 32.7
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 1.3e-06 56.6 87 32.2
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 1.7e-06 56.2 84 29.8
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 4.8e-06 54.7 95 31.6
TAR636G0767 Trochodendron aralioides HOM05D004409 ORTHO05D005292 4.8e-06 54.7 42 52.4
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 6.3e-06 54.3 45 55.6


User provided reference genes

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