Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.6e-79 299.3 143 100.0
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.2e-52 209.1 113 84.1
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.4e-43 177.9 113 74.3
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.0e-34 149.4 100 66.0
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.1e-31 137.9 91 67.0
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.3e-30 136.0 91 68.1
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.2e-29 133.7 112 54.5
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 3.4e-29 132.1 112 58.0
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 4.4e-29 131.7 108 58.3
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 4.4e-29 131.7 110 54.5
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 7.5e-29 131.0 107 56.1
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 9.8e-29 130.6 110 53.6
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.3e-28 130.2 107 56.1
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 1.7e-28 129.8 107 55.1
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.9e-28 129.0 107 54.2
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 1.1e-27 127.1 118 51.7
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 3.2e-27 125.6 108 55.6
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.1e-27 125.2 112 54.5
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 7.0e-27 124.4 112 52.7
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 7.0e-27 124.4 108 55.6
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.0e-26 122.9 108 53.7
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.7e-26 122.5 110 50.9
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.7e-26 122.5 110 50.9
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 2.7e-26 122.5 110 50.9
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 3.5e-26 122.1 114 51.8
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 6.0e-26 121.3 111 52.3
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 6.0e-26 121.3 111 51.4
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 6.0e-26 121.3 113 49.6
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.8e-26 120.9 111 53.2
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.3e-25 120.2 108 50.0
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.3e-25 119.4 111 50.5
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.3e-25 119.4 110 48.2
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 3.0e-25 119.0 106 52.8
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 3.9e-25 118.6 118 49.2
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 6.6e-25 117.9 85 57.6
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 8.6e-25 117.5 109 49.5
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 8.6e-25 117.5 113 50.4
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 1.5e-24 116.7 108 48.1
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 1.5e-24 116.7 112 52.7
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.9e-24 116.3 113 46.0
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 2.5e-24 115.9 91 56.0
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 3.3e-24 115.5 102 50.0
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.3e-24 115.2 106 51.9
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 4.3e-24 115.2 105 52.4
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 5.6e-24 114.8 112 49.1
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 7.3e-24 114.4 112 50.0
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 7.3e-24 114.4 126 42.1
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 9.5e-24 114.0 117 47.9
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 9.5e-24 114.0 101 52.5
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 1.2e-23 113.6 103 49.5
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 1.2e-23 113.6 86 58.1
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 1.2e-23 113.6 103 48.5
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 1.6e-23 113.2 107 51.4
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.6e-23 113.2 102 49.0
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 1.6e-23 113.2 106 50.9
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.1e-23 112.8 112 49.1
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.1e-23 112.8 108 47.2
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 3.6e-23 112.1 107 49.5
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 3.6e-23 112.1 116 50.0
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 4.7e-23 111.7 109 50.5
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 4.7e-23 111.7 108 47.2
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 4.7e-23 111.7 114 50.9
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 8.0e-23 110.9 106 50.9
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 8.0e-23 110.9 84 54.8
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.1e-22 110.5 103 47.6
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 1.1e-22 110.5 91 52.7
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 1.4e-22 110.2 111 51.4
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.3e-22 109.4 108 47.2
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 2.3e-22 109.4 119 47.1
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 3.1e-22 109.0 112 45.5
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 3.1e-22 109.0 111 47.7
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 4.0e-22 108.6 108 45.4
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 5.2e-22 108.2 111 45.0
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 5.2e-22 108.2 114 46.5
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 5.2e-22 108.2 106 50.9
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 6.8e-22 107.8 86 53.5
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 6.8e-22 107.8 102 49.0
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 6.8e-22 107.8 116 44.8
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 6.8e-22 107.8 106 49.1
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 8.9e-22 107.5 119 44.5
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 8.9e-22 107.5 101 46.5
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.9e-22 107.5 104 48.1
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.9e-22 107.5 104 48.1
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.2e-21 107.1 106 50.0
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.5e-21 106.7 89 52.8
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 2.0e-21 106.3 81 53.1
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 2.6e-21 105.9 109 47.7
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 2.6e-21 105.9 107 44.9
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.4e-21 105.5 91 50.5
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 4.4e-21 105.1 103 45.6
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 4.4e-21 105.1 101 46.5
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.4e-21 105.1 89 51.7
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 4.4e-21 105.1 116 44.0
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 1.3e-20 103.6 104 48.1
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.3e-20 103.6 91 49.5
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 2.2e-20 102.8 91 48.4
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.2e-20 102.8 122 41.0
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 3.7e-20 102.1 98 46.9
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 4.9e-20 101.7 123 47.2
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 6.4e-20 101.3 113 39.8
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 6.4e-20 101.3 115 40.9
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.1e-19 100.5 102 43.1
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 1.4e-19 100.1 109 45.9
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 1.4e-19 100.1 107 43.0
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.9e-19 99.8 109 44.0
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.9e-19 99.8 91 48.4
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 2.4e-19 99.4 109 44.0
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.2e-19 99.0 99 43.4
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 7.0e-19 97.8 119 46.2
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 9.2e-19 97.4 82 53.7
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 2.1e-18 96.3 86 50.0
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 2.1e-18 96.3 104 45.2
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 2.1e-18 96.3 110 44.5
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 2.7e-18 95.9 105 43.8
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 2.7e-18 95.9 108 43.5
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 2.7e-18 95.9 97 43.3
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.5e-18 95.5 106 39.6
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 6.0e-18 94.7 97 44.3
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 6.0e-18 94.7 108 42.6
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.0e-17 94.0 124 37.9
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.0e-17 94.0 104 43.3
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.0e-17 94.0 109 45.0
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 1.3e-17 93.6 114 39.5
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.3e-17 93.6 85 49.4
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.7e-17 93.2 117 40.2
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 1.7e-17 93.2 116 38.8
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 3.9e-17 92.0 103 41.7
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.9e-17 92.0 114 36.0
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 5.0e-17 91.7 85 48.2
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 8.6e-17 90.9 108 40.7
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.5e-16 90.1 103 39.8
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.5e-16 90.1 116 37.1
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 2.5e-16 89.4 108 39.8
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 4.3e-16 88.6 109 36.7
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 1.2e-15 87.0 86 48.8
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 1.6e-15 86.7 111 37.8
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 3.6e-15 85.5 100 43.0
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 6.2e-15 84.7 81 43.2
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.8e-14 83.2 117 35.9
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.6e-13 79.3 113 38.9
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 2.6e-13 79.3 103 41.7
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 7.5e-13 77.8 81 40.7
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 7.5e-13 77.8 113 31.9
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 1.7e-12 76.6 81 35.8
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 2.2e-12 76.3 117 30.8
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 1.1e-11 73.9 117 29.9
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 1.4e-11 73.6 81 38.3
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 5.4e-11 71.6 112 33.9
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 1.6e-10 70.1 117 30.8
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 2.1e-10 69.7 115 27.8
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 2.7e-10 69.3 106 35.8
SMO111G0095 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 3.5e-10 68.9 93 34.4
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 7.8e-10 67.8 112 28.6
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 7.8e-10 67.8 112 28.6
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 7.8e-10 67.8 112 28.6
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.0e-09 65.9 53 52.8
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 8.6e-09 64.3 103 30.1
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 8.6e-09 64.3 103 30.1
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.5e-08 63.5 104 33.7
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 3.3e-08 62.4 102 29.4
PSO349G0104 Papaver somniferum HOM05D002739 ORTHO05D002877 4.3e-08 62.0 109 32.1
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.2e-07 60.5 107 34.6
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.6e-07 60.1 112 28.6
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 2.1e-07 59.7 60 40.0
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 2.8e-07 59.3 61 44.3
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.8e-07 59.3 60 38.3
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.2e-07 58.2 129 30.2
PSO384G1774 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-06 57.4 61 39.3
PSO384G3657 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-06 57.4 61 39.3
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-06 57.0 60 38.3
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.4e-06 57.0 63 31.7
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.8e-06 56.6 61 37.7
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.8e-06 56.6 61 37.7
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.8e-06 56.6 61 37.7
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.8e-06 56.6 61 37.7
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.8e-06 56.6 113 31.0
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.8e-06 56.6 113 31.0
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.8e-06 56.6 107 30.8
PSO349G0096 Papaver somniferum HOM05D002739 ORTHO05D002877 2.4e-06 56.2 107 32.7
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 4.0e-06 55.5 60 36.7
Nn2g15046 Nelumbo nucifera HOM05D002739 ORTHO05D002877 4.0e-06 55.5 61 36.1
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 5.2e-06 55.1 61 34.4
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 6.8e-06 54.7 61 32.8
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 8.9e-06 54.3 39 61.5


User provided reference genes

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