Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.7e-86 322.0 169 100.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.0e-56 221.5 175 68.6
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.9e-55 219.5 172 69.2
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.2e-55 218.4 172 66.9
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 9.4e-55 217.2 174 65.5
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.2e-54 216.9 174 65.5
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.6e-54 215.3 173 65.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 4.7e-54 214.9 172 66.9
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.7e-54 214.9 173 66.5
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.0e-54 214.2 171 67.3
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 3.0e-53 212.2 172 65.7
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 6.7e-53 211.1 169 68.0
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 6.7e-53 211.1 175 65.7
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 8.8e-53 210.7 172 64.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 8.8e-53 210.7 169 67.5
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.2e-52 210.3 171 66.1
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.2e-52 210.3 173 64.2
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.0e-52 209.5 171 65.5
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.0e-52 209.5 171 66.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.0e-52 209.5 171 66.1
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-52 209.5 171 66.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-52 209.5 171 66.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.0e-52 209.5 173 63.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.6e-52 209.1 170 64.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.6e-52 209.1 170 67.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.6e-52 209.1 173 63.6
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 4.4e-52 208.4 169 66.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 4.4e-52 208.4 169 66.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.4e-52 208.4 174 64.4
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.4e-52 208.4 169 65.7
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.5e-52 207.6 173 65.3
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 9.7e-52 207.2 169 65.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.3e-51 206.8 169 65.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.7e-51 206.5 173 62.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.7e-51 206.5 173 64.2
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.2e-51 206.1 172 64.5
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.8e-51 205.7 173 63.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.4e-50 203.4 166 65.7
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.4e-50 203.4 171 62.6
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 7.0e-50 201.1 172 62.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.0e-49 199.5 161 64.6
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 5.0e-48 194.9 171 60.8
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 5.0e-48 194.9 185 58.4
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 5.0e-48 194.9 172 59.3
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 4.2e-47 191.8 169 60.9
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 5.5e-47 191.4 156 65.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 5.5e-47 191.4 170 58.8
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 5.5e-47 191.4 186 57.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.2e-46 190.3 165 61.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.7e-46 189.1 173 59.5
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.7e-46 188.3 166 61.4
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.7e-46 188.3 166 61.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 4.7e-46 188.3 168 58.3
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.0e-45 187.2 164 61.0
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.3e-45 186.0 162 62.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 2.3e-45 186.0 173 60.7
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.0e-45 185.7 173 57.8
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 4.0e-45 185.3 153 65.4
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 5.2e-45 184.9 168 60.1
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 5.2e-45 184.9 171 57.3
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 8.8e-45 184.1 164 60.4
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.2e-44 183.7 161 61.5
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.5e-44 183.3 186 54.3
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-44 183.3 186 54.3
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-44 183.3 186 54.3
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-44 183.3 186 54.3
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-44 183.3 186 54.3
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-44 183.3 186 54.3
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.0e-44 183.0 163 63.2
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-44 182.2 186 54.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.4e-44 182.2 174 57.5
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 4.4e-44 181.8 169 59.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 5.7e-44 181.4 168 60.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.7e-43 179.9 168 60.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 4.8e-43 178.3 166 60.2
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 6.3e-43 177.9 173 55.5
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-42 177.2 186 53.2
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.4e-42 176.8 165 61.2
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 3.1e-42 175.6 167 58.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 5.4e-42 174.9 114 77.2
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.0e-41 172.9 149 59.7
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.7e-41 172.6 163 56.4
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.7e-41 172.6 168 58.9
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.5e-41 172.2 167 59.3
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.5e-41 171.8 121 70.2
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 5.9e-41 171.4 173 54.3
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.0e-40 170.6 176 53.4
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 5.0e-40 168.3 115 72.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.5e-39 166.8 172 54.1
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.5e-39 166.8 173 53.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.9e-39 166.4 170 54.7
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.9e-39 166.4 166 54.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-39 166.0 170 53.5
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-39 165.6 171 54.4
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.2e-39 165.2 171 53.8
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.2e-39 165.2 171 53.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 5.5e-39 164.9 172 53.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 7.2e-39 164.5 171 53.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 7.2e-39 164.5 171 53.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 9.5e-39 164.1 171 53.2
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.2e-38 163.7 171 49.1
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.6e-38 163.3 161 60.2
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.0e-37 160.6 172 51.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.4e-37 160.2 172 51.2
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.3e-37 159.5 169 54.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 6.8e-37 157.9 107 73.8
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.7e-35 153.3 178 47.2
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.3e-35 151.4 160 48.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.4e-34 150.2 170 47.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.5e-33 145.2 160 48.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 6.6e-32 141.4 162 49.4
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 3.3e-31 139.0 95 71.6
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 5.6e-31 138.3 166 48.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 9.5e-31 137.5 146 51.4
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 8.0e-30 134.4 100 66.0
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 8.0e-30 134.4 99 66.7
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.0e-29 134.0 98 66.3
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 8.9e-29 131.0 165 45.5
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-28 130.2 101 63.4
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 2.0e-28 129.8 86 73.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.7e-27 126.7 182 43.4
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.2e-26 122.5 175 41.1
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.0e-25 118.2 171 43.9
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.0e-24 117.5 74 74.3
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-22 108.6 85 61.2
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 6.8e-21 104.8 147 41.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.8e-21 104.8 150 40.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 6.8e-21 104.8 147 41.5
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.4e-20 102.4 85 58.8
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 3.4e-20 102.4 104 54.8
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.3e-19 100.5 181 32.0
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.2e-19 99.8 85 56.5
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 8.3e-19 97.8 115 45.2
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 8.3e-19 97.8 115 45.2
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 8.3e-19 97.8 115 47.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-18 96.3 115 45.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-16 90.5 102 45.1
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-15 86.3 112 46.4
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.3e-15 84.7 89 57.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.7e-14 82.0 112 46.4
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 3.1e-13 79.3 51 74.5
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.6e-12 76.3 59 62.7
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 2.2e-11 73.2 99 44.4
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-11 73.2 59 61.0
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.2e-11 73.2 59 61.0
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 3.2e-10 69.3 111 41.4
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-09 67.4 118 40.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-09 67.0 104 34.6
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.1e-09 66.6 98 41.8
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 3.0e-08 62.8 72 45.8
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.0e-08 62.8 149 28.9
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.1e-08 62.0 118 39.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 4.3e-07 58.9 130 33.8
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-06 56.2 138 33.3


User provided reference genes

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