Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 0.0e+00 1230.3 658 100.0
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 3.1e-130 469.9 516 54.7
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.3e-128 464.5 649 46.8
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.1e-126 457.2 482 56.4
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 4.0e-125 453.0 651 45.2
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 5.2e-125 452.6 496 53.4
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.4e-122 444.5 591 46.7
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.6e-121 441.0 537 50.5
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.2e-116 424.9 517 50.7
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 9.8e-116 421.8 742 41.1
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.8e-114 417.5 492 50.4
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.2e-114 416.8 527 49.7
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.6e-113 412.9 521 48.8
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 5.9e-113 412.5 535 49.2
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.3e-112 410.6 663 42.8
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.1e-111 408.3 697 42.3
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.1e-111 408.3 535 49.0
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 3.1e-109 400.2 813 37.5
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.9e-109 398.7 480 49.6
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 4.4e-108 396.4 493 50.1
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.3e-107 394.8 508 48.8
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 4.9e-107 392.9 526 46.6
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.1e-106 391.7 432 52.5
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 9.2e-106 388.7 427 52.2
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 7.8e-105 385.6 615 41.8
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 7.8e-105 385.6 477 48.2
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.0e-104 385.2 504 47.0
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.5e-103 380.6 502 47.2
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 5.6e-103 379.4 506 46.6
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 9.5e-103 378.6 544 44.7
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.8e-102 377.1 477 47.6
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 1.5e-100 371.3 491 46.8
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 2.6e-100 370.5 499 46.1
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 3.4e-100 370.2 493 47.9
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.8e-100 369.4 485 48.2
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.8e-100 369.4 485 48.2
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.8e-100 369.4 485 48.2
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.2e-99 367.5 495 47.5
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 4.9e-99 366.3 436 48.9
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 6.4e-99 365.9 503 46.5
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.9e-98 364.4 453 50.8
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.9e-98 364.4 499 45.7
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.9e-95 354.4 344 57.8
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.5e-95 354.0 414 51.9
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 9.5e-95 352.1 412 50.5
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 2.1e-94 350.9 461 48.2
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 2.8e-94 350.5 452 47.3
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 2.3e-93 347.4 499 45.7
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 4.0e-93 346.7 483 46.6
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 5.2e-93 346.3 485 46.2
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 6.8e-93 345.9 479 45.7
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 4.4e-92 343.2 502 43.4
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 7.6e-92 342.4 419 49.2
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 9.9e-92 342.0 485 46.0
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 3.8e-91 340.1 476 44.1
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 3.8e-91 340.1 477 46.1
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 4.1e-90 336.7 346 57.2
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 5.4e-90 336.3 322 57.8
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 2.7e-89 334.0 537 42.3
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 7.8e-89 332.4 480 46.2
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.0e-88 332.0 479 45.3
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 2.3e-88 330.9 494 44.3
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 3.9e-88 330.1 293 62.5
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 1.1e-87 328.6 493 42.6
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.6e-86 324.7 403 49.9
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 2.1e-86 324.3 479 45.5
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 3.4e-84 317.0 466 45.3
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 8.4e-83 312.4 473 43.3
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.3e-82 308.9 297 57.9
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 3.0e-80 303.9 498 42.0
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.3e-79 300.4 496 40.7
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 4.3e-79 300.1 288 58.3
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.3e-78 298.5 454 44.5
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.3e-77 293.1 430 45.6
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 9.0e-77 292.4 442 44.3
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.1e-74 285.4 506 38.5
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.4e-74 285.0 458 41.0
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.9e-74 284.6 328 50.6
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 2.1e-73 281.2 433 41.1
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.7e-73 280.8 432 43.3
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.0e-72 277.3 521 38.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.5e-71 274.2 419 41.1
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 4.3e-71 273.5 411 40.4
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 9.6e-71 272.3 500 38.4
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 4.0e-69 266.9 504 36.9
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 6.9e-69 266.2 461 39.5
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.5e-68 265.0 330 48.5
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.7e-67 261.5 407 39.8
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.7e-67 261.5 463 38.2
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 4.9e-67 260.0 500 36.8
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 2.1e-65 254.6 255 57.6
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 6.0e-65 253.1 507 35.7
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.8e-64 251.5 497 35.4
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 3.9e-64 250.4 472 37.5
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 5.1e-64 250.0 472 39.2
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 6.7e-64 249.6 472 35.8
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 6.7e-64 249.6 497 36.6
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 4.3e-63 246.9 472 35.8
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.6e-62 245.0 470 35.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 2.1e-62 244.6 470 35.5
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 3.7e-62 243.8 425 38.8
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 6.2e-62 243.0 472 34.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 8.1e-62 242.7 412 38.1
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.4e-61 241.9 252 54.4
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.3e-59 235.3 295 46.4
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.1e-55 222.2 227 53.7
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 4.8e-54 216.9 326 43.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 5.0e-51 206.8 403 37.5
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 5.5e-50 203.4 326 39.0
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.3e-43 182.2 265 44.2
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.9e-43 181.0 286 40.9
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 5.0e-43 180.3 487 33.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 5.5e-42 176.8 186 58.6
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 5.5e-42 176.8 282 39.4
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 6.1e-41 173.3 375 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 4.8e-38 163.7 536 29.3
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 5.3e-37 160.2 465 30.1
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 7.7e-36 156.4 284 37.0
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 8.5e-35 152.9 389 31.4
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 6.7e-32 143.3 218 43.1
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.9e-26 125.2 100 63.0
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.9e-26 125.2 164 44.5
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.5e-26 123.6 110 59.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.4e-26 122.9 234 38.5
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 2.8e-22 111.3 177 39.5
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 2.7e-20 104.8 207 37.7
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-18 99.4 89 55.1
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 8.0e-17 93.2 123 43.9
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 3.0e-16 91.3 274 29.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 4.4e-15 87.4 179 38.0
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 7.5e-15 86.7 346 27.5
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 3.1e-13 81.3 150 35.3
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 7.0e-13 80.1 144 35.4
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.2e-12 79.3 172 34.9
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 5.9e-12 77.0 165 33.9
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 4.2e-10 70.9 149 34.2
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 5.5e-10 70.5 116 36.2
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.6e-09 68.9 46 73.9
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.8e-09 68.2 72 45.8
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.3e-08 65.1 176 31.8
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 4.0e-08 64.3 121 37.2
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.2e-08 63.9 142 33.1
DCAR_005511 Daucus carota HOM05D004311 ORTHO05D005145 1.2e-07 62.8 82 42.7
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 1.2e-07 62.8 74 50.0
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 5.7e-07 60.5 429 21.2
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 5.7e-07 60.5 134 34.3
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 2.2e-06 58.5 121 37.2
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 3.7e-06 57.8 114 38.6
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 4.9e-06 57.4 57 50.9
Ah.13g074370 Amaranthus hybridus HOM05D004311 ORTHO05D005145 8.3e-06 56.6 145 32.4
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 8.3e-06 56.6 59 50.8


User provided reference genes

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