Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.2e-123 444.1 221 100.0
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 1.0e-61 240.7 193 68.4
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 3.3e-60 235.7 197 70.6
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 9.7e-60 234.2 197 68.5
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 2.2e-59 233.0 197 67.5
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.2e-59 233.0 197 66.5
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 1.1e-58 230.7 197 67.5
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 7.7e-57 224.6 197 66.0
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 5.0e-56 221.9 204 64.2
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 2.1e-54 216.5 199 65.3
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.8e-53 213.4 226 58.4
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 2.3e-53 213.0 203 65.0
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 1.2e-52 210.7 204 64.7
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 3.4e-52 209.1 219 58.0
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.3e-51 207.2 197 64.0
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.8e-50 203.4 196 62.8
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 7.7e-49 198.0 211 58.8
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.2e-48 196.4 227 56.4
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.8e-48 195.7 229 54.1
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 5.0e-48 195.3 210 54.8
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 3.2e-47 192.6 201 59.7
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.7e-46 189.5 205 59.0
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 2.7e-46 189.5 180 59.4
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 6.1e-46 188.3 214 57.0
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.4e-45 187.2 224 54.5
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.0e-45 186.0 241 52.7
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 4.0e-45 185.7 158 65.2
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.5e-44 181.4 207 56.5
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 2.8e-43 179.5 215 51.2
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.7e-43 179.1 205 55.1
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 5.4e-42 175.3 194 55.7
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 7.0e-42 174.9 223 52.9
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 7.0e-42 174.9 223 52.9
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 7.0e-42 174.9 241 51.5
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 2.7e-41 172.9 155 65.8
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 6.6e-40 168.3 150 62.7
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 3.3e-39 166.0 165 60.6
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 4.3e-39 165.6 181 55.8
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 2.1e-38 163.3 191 51.8
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 6.8e-37 158.3 181 56.4
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 3.4e-36 156.0 175 53.7
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 3.4e-36 156.0 175 53.7
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 2.9e-35 152.9 202 49.5
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 8.3e-35 151.4 188 52.1
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.4e-34 149.8 195 49.2
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 9.2e-34 147.9 209 50.7
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 3.0e-32 142.9 181 50.8
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 3.9e-32 142.5 222 45.9
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 1.5e-31 140.6 202 46.5
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 9.5e-31 137.9 202 47.0
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 4.7e-30 135.6 175 53.1
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.0e-29 134.4 228 43.4
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 1.5e-28 130.6 163 49.7
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 2.0e-28 130.2 177 46.9
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 5.8e-28 128.6 206 46.6
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.7e-27 127.1 190 43.2
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.2e-20 104.4 129 48.1
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 1.5e-20 104.0 195 32.8
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.0e-20 103.6 220 35.9
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.7e-19 100.5 154 39.6
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 3.5e-17 92.8 218 33.9
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.5e-17 92.8 204 28.4
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 4.6e-17 92.4 158 36.1
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 4.6e-17 92.4 108 49.1
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.0e-17 92.0 207 32.9
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.3e-16 90.9 186 30.6
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.3e-16 90.9 140 42.9
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.3e-16 90.9 197 34.5
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.7e-16 90.5 207 32.9
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.7e-16 90.5 207 32.9
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.7e-16 90.5 212 31.6
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.7e-16 90.5 188 34.0
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.3e-16 90.1 196 28.1
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.0e-16 89.7 207 32.4
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.6e-16 88.6 209 31.6
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 6.6e-16 88.6 183 31.1
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 6.6e-16 88.6 170 35.3
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 6.6e-16 88.6 175 32.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 8.6e-16 88.2 222 29.3
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 8.6e-16 88.2 168 33.9
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 8.6e-16 88.2 111 45.9
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.5e-15 87.4 124 34.7
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.5e-15 86.7 179 34.6
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 3.3e-15 86.3 196 31.1
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.3e-15 85.9 170 32.4
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 4.3e-15 85.9 194 30.9
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 4.3e-15 85.9 174 32.8
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 7.3e-15 85.1 144 34.0
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.2e-14 84.3 153 33.3
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.6e-14 84.0 153 36.6
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.6e-14 84.0 151 34.4
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.6e-14 84.0 120 35.8
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 2.1e-14 83.6 178 34.3
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.8e-14 83.2 162 32.1
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 2.8e-14 83.2 136 32.4
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.8e-14 83.2 207 30.0
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 3.6e-14 82.8 244 27.0
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 3.6e-14 82.8 215 31.6
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 4.7e-14 82.4 206 28.6
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 4.7e-14 82.4 210 31.0
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 6.2e-14 82.0 191 32.5
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 6.2e-14 82.0 202 29.2
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.2e-14 82.0 184 33.2
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 8.1e-14 81.6 194 30.4
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 8.1e-14 81.6 201 29.9
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.1e-13 81.3 150 32.7
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 2.3e-13 80.1 178 31.5
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 2.3e-13 80.1 180 31.1
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-13 80.1 172 31.4
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.3e-13 80.1 195 32.3
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 4.0e-13 79.3 172 30.8
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.0e-13 79.3 176 32.4
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.0e-13 79.3 210 30.0
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 5.2e-13 79.0 212 28.8
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 5.2e-13 79.0 148 33.1
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 5.2e-13 79.0 224 26.3
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 6.8e-13 78.6 217 27.2
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 6.8e-13 78.6 203 29.6
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 8.9e-13 78.2 151 33.8
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.2e-12 77.8 179 28.5
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.2e-12 77.8 191 31.4
PSO017G2423 Papaver somniferum HOM05D047741 ORTHO05D002891 1.5e-12 77.4 209 37.8
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.5e-12 77.4 150 32.0
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.5e-12 77.4 200 32.5
PSO675G3707 Papaver somniferum HOM05D047741 ORTHO05D002891 2.0e-12 77.0 209 35.9
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.6e-12 76.6 207 30.0
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.6e-12 76.6 227 29.1
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 2.6e-12 76.6 153 32.0
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 5.8e-12 75.5 197 27.9
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 5.8e-12 75.5 153 32.0
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 5.8e-12 75.5 200 28.5
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 5.8e-12 75.5 194 28.4
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 9.9e-12 74.7 186 29.6
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 9.9e-12 74.7 172 28.5
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 9.9e-12 74.7 180 30.0
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 1.3e-11 74.3 172 29.7
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 1.3e-11 74.3 185 27.0
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.7e-11 73.9 142 31.7
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.2e-11 73.6 206 27.7
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 2.2e-11 73.6 175 29.7
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.9e-11 73.2 194 28.4
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 3.8e-11 72.8 189 29.1
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 3.8e-11 72.8 206 29.1
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 4.9e-11 72.4 197 32.0
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.9e-11 72.4 185 31.4
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 4.9e-11 72.4 192 28.6
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 4.9e-11 72.4 162 29.6
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 8.4e-11 71.6 181 30.4
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 1.9e-10 70.5 210 28.1
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.9e-10 70.5 219 26.0
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.4e-10 70.1 200 28.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.2e-10 69.7 205 26.8
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 4.1e-10 69.3 225 25.3
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 5.4e-10 68.9 154 29.9
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 7.1e-10 68.6 182 31.3
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 7.1e-10 68.6 124 31.5
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.1e-09 67.0 203 30.0
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 2.1e-09 67.0 185 31.4
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 3.5e-09 66.2 155 29.7
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 4.6e-09 65.9 130 28.5
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 4.6e-09 65.9 199 29.6
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 6.0e-09 65.5 207 25.1
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 6.0e-09 65.5 201 30.8
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.7e-08 63.9 201 29.9
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 3.0e-08 63.2 171 26.3
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 3.0e-08 63.2 209 29.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 3.9e-08 62.8 192 26.6
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 6.6e-08 62.0 207 29.0
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 8.6e-08 61.6 197 31.5
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 8.6e-08 61.6 151 28.5
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 1.1e-07 61.2 169 29.6
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 1.5e-07 60.8 102 35.3
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 1.5e-07 60.8 130 28.5
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 1.9e-07 60.5 198 26.8
MELO3C030199.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.3e-07 59.7 77 51.9
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 3.3e-07 59.7 191 26.7
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 4.3e-07 59.3 195 29.7
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 5.6e-07 58.9 181 30.9
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 7.3e-07 58.5 194 29.4
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.2e-06 57.8 231 27.3
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 1.6e-06 57.4 215 27.9
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 2.8e-06 56.6 209 26.8
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 3.6e-06 56.2 197 27.4
Nn6g34775 Nelumbo nucifera HOM05D001667 ORTHO05D001508 6.2e-06 55.5 132 27.3
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 6.2e-06 55.5 151 33.1
Sabra05G0124600 Salix brachista HOM05D002704 ORTHO05D002891 6.2e-06 55.5 104 36.5
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 8.1e-06 55.1 202 27.2


User provided reference genes

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