Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 9.1e-86 320.1 149 100.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 7.0e-78 293.9 145 91.7
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 2.0e-77 292.4 149 88.6
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.5e-77 291.6 147 89.8
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 3.5e-77 291.6 144 91.7
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 2.2e-76 288.9 147 90.5
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.9e-76 288.5 148 87.2
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.9e-76 288.5 146 88.4
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 3.8e-76 288.1 147 89.1
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 8.5e-76 287.0 144 89.6
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.5e-75 285.4 144 88.9
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 3.2e-75 285.0 148 87.2
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 3.2e-75 285.0 148 87.2
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 7.2e-75 283.9 149 83.9
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.2e-74 283.1 148 86.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.2e-74 283.1 147 87.1
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.2e-74 283.1 148 87.2
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.6e-74 282.7 147 83.0
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.6e-74 282.7 147 87.8
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 2.1e-74 282.3 149 86.6
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 2.7e-74 282.0 144 87.5
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 3.6e-74 281.6 147 86.4
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 6.1e-74 280.8 148 85.8
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 6.1e-74 280.8 147 83.0
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 8.0e-74 280.4 149 84.6
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 8.0e-74 280.4 144 84.7
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.4e-73 279.6 144 86.1
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.8e-73 279.3 147 82.3
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 2.3e-73 278.9 147 85.0
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 3.0e-73 278.5 149 83.9
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 4.0e-73 278.1 149 83.9
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 4.0e-73 278.1 147 84.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 5.2e-73 277.7 149 83.2
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 5.2e-73 277.7 149 83.9
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 6.8e-73 277.3 148 85.1
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 8.8e-73 276.9 143 87.4
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 8.8e-73 276.9 149 83.2
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 8.8e-73 276.9 149 83.9
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 8.8e-73 276.9 148 82.4
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.2e-72 276.6 149 83.9
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-72 276.2 143 86.7
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.5e-72 276.2 143 86.7
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.5e-72 276.2 144 86.1
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.0e-72 275.8 147 83.7
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 2.6e-72 275.4 143 86.0
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.6e-72 275.4 143 86.7
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.6e-72 275.4 147 85.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.6e-72 275.4 176 75.0
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 4.4e-72 274.6 144 86.1
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 5.7e-72 274.2 149 83.2
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.5e-72 273.9 149 81.9
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.5e-72 273.9 149 81.9
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-71 273.1 149 82.6
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.3e-71 273.1 149 81.9
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.3e-71 273.1 149 81.9
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.3e-71 273.1 149 81.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.3e-71 273.1 143 84.6
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.7e-71 272.7 147 81.6
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 2.2e-71 272.3 143 84.6
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.2e-71 272.3 149 81.9
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 2.2e-71 272.3 187 71.1
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 2.2e-71 272.3 141 86.5
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.2e-71 272.3 143 83.2
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 2.8e-71 271.9 143 83.9
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.8e-71 271.9 144 85.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 6.3e-71 270.8 144 83.3
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 8.3e-71 270.4 143 85.3
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-70 270.0 143 85.3
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.1e-70 270.0 143 85.3
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.1e-70 270.0 147 83.0
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.1e-70 270.0 147 83.0
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.4e-70 269.6 150 82.7
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.4e-70 269.6 147 83.0
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.4e-70 269.6 143 83.9
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 3.1e-70 268.5 147 82.3
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.0e-70 267.3 147 82.3
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.2e-69 266.5 144 81.2
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 3.5e-69 265.0 149 80.5
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 4.5e-69 264.6 144 82.6
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 5.9e-69 264.2 144 81.2
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.7e-68 262.7 147 80.3
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.3e-68 262.3 149 79.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 8.6e-68 260.4 148 79.7
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 8.6e-68 260.4 144 79.2
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-66 256.5 145 79.3
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.4e-65 253.1 144 75.7
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.0e-65 251.9 144 77.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 4.0e-65 251.5 147 74.8
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 5.7e-64 247.7 144 75.7
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 9.8e-64 246.9 123 90.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.3e-63 246.5 141 81.6
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 7.0e-62 240.7 123 89.4
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 7.0e-62 240.7 126 85.7
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.6e-61 239.6 124 87.9
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.7e-61 238.8 120 86.7
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.5e-61 238.0 119 92.4
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 7.8e-61 237.3 124 87.1
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 4.3e-59 231.5 136 76.5
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 4.7e-58 228.0 119 84.9
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.3e-57 225.7 140 75.7
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 2.3e-57 225.7 123 82.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 3.0e-57 225.3 121 84.3
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 5.2e-57 224.6 140 71.4
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.2e-57 224.6 166 66.9
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 5.4e-54 214.5 128 76.6
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.5e-53 211.8 109 88.1
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 7.8e-53 210.7 120 79.2
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.7e-50 201.4 111 82.9
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.4e-49 199.9 112 79.5
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.9e-47 192.2 99 85.9
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.6e-42 176.4 91 89.0
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.8e-41 172.9 147 52.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 4.0e-41 171.8 92 87.0
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.5e-40 169.9 147 57.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 9.9e-40 167.2 116 68.1
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.7e-39 166.4 90 82.2
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 8.3e-39 164.1 147 51.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.2e-38 162.2 140 55.7
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.1e-36 154.8 147 51.0
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.1e-35 153.7 145 51.0
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.9e-35 152.9 146 49.3
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.4e-33 146.0 133 54.1
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 3.4e-32 142.1 143 54.5
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.4e-30 136.7 85 71.8
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.0e-28 129.0 72 83.3
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.8e-26 122.5 70 81.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 4.7e-26 121.7 149 45.0
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 9.0e-25 117.5 59 84.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.3e-23 113.6 120 48.3
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 4.6e-21 105.1 53 86.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.4e-17 92.8 143 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 2.4e-14 82.8 81 51.9
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 7.4e-11 71.2 31 96.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 9.6e-11 70.9 141 33.3
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 1.6e-10 70.1 147 29.9
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 9.0e-09 64.3 79 46.8
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.6e-08 62.8 63 52.4
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 3.4e-08 62.4 94 35.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 7.6e-08 61.2 154 27.9


User provided reference genes

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