Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1648.6 790 100.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1363.6 802 81.0
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1334.7 807 78.3
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1322.4 823 76.9
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1319.3 804 78.6
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1317.0 806 76.9
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1313.5 805 78.6
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1311.2 807 77.2
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1309.7 807 77.4
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1309.3 807 76.8
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1301.6 807 76.8
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1294.6 807 77.4
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1294.6 802 76.6
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1283.5 806 75.2
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1281.9 809 75.8
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1279.6 807 74.7
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1275.0 800 75.0
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1273.8 807 75.0
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1268.8 803 74.7
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1267.3 820 74.6
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1265.8 843 72.1
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1263.4 807 76.1
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1261.5 806 74.4
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1260.4 841 72.2
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1260.4 803 74.8
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1258.8 803 74.8
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1255.7 816 74.1
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1253.0 803 74.5
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1251.5 807 73.4
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1250.7 889 70.3
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1248.4 806 73.3
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1235.7 806 72.6
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1232.6 804 72.8
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1229.5 802 73.8
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1228.8 758 77.4
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1228.4 806 71.3
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1227.2 806 72.7
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1222.2 806 72.5
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1221.8 773 74.6
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1216.4 804 71.1
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1214.1 808 71.3
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1213.7 836 70.6
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1213.4 808 71.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1208.0 808 71.0
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1206.0 807 71.1
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1203.0 857 67.7
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1200.7 808 70.4
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1190.6 805 71.1
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1190.6 809 70.0
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1185.2 818 69.8
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1184.9 802 70.7
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1183.7 808 70.4
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1183.3 838 67.2
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1180.6 805 69.9
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1179.9 801 70.2
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1177.9 806 70.3
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1175.6 850 66.5
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1169.5 802 69.3
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1165.2 801 69.0
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1164.1 786 70.9
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1163.3 801 68.9
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1157.9 809 68.1
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1156.0 807 68.2
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1154.8 810 67.5
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1153.3 809 67.7
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1150.2 808 68.7
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1150.2 808 68.7
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1149.0 810 67.3
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1142.1 807 67.5
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1141.3 798 68.3
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 800 67.9
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 805 67.2
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1131.3 808 69.4
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 810 66.0
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1129.0 810 65.8
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1117.4 807 67.4
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 0.0e+00 1113.6 785 67.4
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1113.2 848 63.8
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 0.0e+00 1111.3 851 63.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 0.0e+00 1083.6 805 65.6
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 0.0e+00 1083.2 803 63.8
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 0.0e+00 1082.4 804 63.1
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 6.1e-306 1053.9 803 63.6
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 9.8e-304 1046.6 713 72.1
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 9.8e-304 1046.6 808 62.9
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 2.7e-298 1028.5 731 68.7
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 3.0e-297 1025.0 718 70.1
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.6e-280 968.8 598 76.9
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 9.5e-267 923.7 613 74.1
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.4e-264 915.2 612 72.4
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 8.6e-260 900.6 804 55.3
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 3.1e-233 812.4 615 62.3
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.7e-231 806.6 609 65.8
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 9.7e-219 764.2 810 48.8
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.3e-207 727.2 813 48.1
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 1.2e-200 704.1 809 45.6
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 2.3e-188 663.3 461 69.0
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 6.5e-183 645.2 533 59.8
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 5.6e-174 615.5 457 66.3
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 7.8e-160 568.5 375 72.8
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.5e-150 537.7 401 68.8
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.0e-148 529.6 589 46.9
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 6.0e-144 515.8 458 55.2
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 6.4e-138 495.7 315 73.0
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 2.4e-137 493.8 446 54.7
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.3e-133 481.5 466 52.6
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 8.7e-119 432.2 340 67.6
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 6.3e-101 372.9 306 65.0
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 4.6e-96 356.7 191 80.1
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 6.7e-87 326.2 237 69.2
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.2e-82 311.2 244 60.7
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.4e-76 292.0 495 38.2
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 6.5e-74 283.1 146 84.2
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 1.5e-70 271.9 149 81.9
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.3e-58 232.3 123 76.4
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 6.1e-56 223.4 193 52.3
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 2.3e-50 204.9 147 59.9
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.8e-48 198.0 191 54.5
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 8.0e-48 196.4 855 25.7
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.8e-40 171.4 93 76.3
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 6.8e-31 140.2 92 66.3
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.6e-25 120.6 179 39.7
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 8.1e-24 116.7 54 87.0
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 1.4e-12 79.3 115 32.2
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.6e-08 65.9 145 31.0
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 8.1e-08 63.5 52 57.7
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 6.9e-07 60.5 169 30.8
Nitab4.5_0000200g0020 Nicotiana tabacum HOM05D001597 ORTHO05D001512 9.0e-07 60.1 167 31.1
PSO135G0595 Papaver somniferum HOM05D001597 ORTHO05D001512 1.5e-06 59.3 220 29.5
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 1.5e-06 59.3 166 28.9
PSO384G0773 Papaver somniferum HOM05D001597 ORTHO05D001512 1.5e-06 59.3 220 29.5
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 1.5e-06 59.3 153 28.1
CDE10G1194 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 2.0e-06 58.9 129 31.0
Os08g0523200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.0e-06 58.9 148 31.1
BcaB01g03233 Brassica carinata HOM05D001597 ORTHO05D001512 2.6e-06 58.5 168 31.0
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 2.6e-06 58.5 123 36.6
HanXRQChr06g0170511 Helianthus annuus HOM05D001597 ORTHO05D001512 2.6e-06 58.5 167 30.5
Nitab4.5_0004074g0030 Nicotiana tabacum HOM05D000563 ORTHO05D000536 2.6e-06 58.5 144 31.9
Nitab4.5_0005619g0030 Nicotiana tabacum HOM05D001597 ORTHO05D001512 2.6e-06 58.5 167 30.5
Thhalv10001385m.g Eutrema salsugineum HOM05D001597 ORTHO05D001512 3.4e-06 58.2 221 29.9
Medtr5g096700 Medicago truncatula HOM05D002322 ORTHO05D002536 3.4e-06 58.2 189 24.9
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.4e-06 58.2 143 28.0
Os10g0435900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.4e-06 58.2 143 28.0
Sp4g28310 Schrenkiella parvula HOM05D001597 ORTHO05D001512 3.4e-06 58.2 168 31.0
HPP92_020334 Vanilla planifolia HOM05D000563 ORTHO05D000536 3.4e-06 58.2 138 30.4
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 4.5e-06 57.8 167 31.7
A05p01530 Brassica napus HOM05D001597 ORTHO05D001512 4.5e-06 57.8 221 30.3
BraA05t19149Z Brassica rapa HOM05D001597 ORTHO05D001512 4.5e-06 57.8 221 30.3
CARHR141530 Cardamine hirsuta HOM05D001597 ORTHO05D001512 4.5e-06 57.8 221 30.3
Nn2g11079 Nelumbo nucifera HOM05D002006 ORTHO05D002128 4.5e-06 57.8 143 27.3
Nitab4.5_0000305g0240 Nicotiana tabacum HOM05D001597 ORTHO05D001512 4.5e-06 57.8 167 30.5
Nitab4.5_0004613g0090 Nicotiana tabacum HOM05D001597 ORTHO05D001512 4.5e-06 57.8 167 30.5
AL4G45540 Arabidopsis lyrata HOM05D001597 ORTHO05D001512 5.8e-06 57.4 221 29.9
AT2G46260 Arabidopsis thaliana HOM05D001597 ORTHO05D001512 5.8e-06 57.4 221 29.9
MSTRG.8986 Avicennia marina HOM05D000563 ORTHO05D000536 5.8e-06 57.4 143 31.5
BcaC02g12518 Brassica carinata HOM05D001597 ORTHO05D001512 5.8e-06 57.4 220 29.5
BcaC05g28338 Brassica carinata HOM05D004988 ORTHO05D018599 5.8e-06 57.4 50 52.0
C03p30450 Brassica napus HOM05D001597 ORTHO05D001512 5.8e-06 57.4 168 30.4
BolC3t15393H Brassica oleracea HOM05D001597 ORTHO05D001512 5.8e-06 57.4 168 30.4
BolC4t21825H Brassica oleracea HOM05D001597 ORTHO05D001512 5.8e-06 57.4 220 29.5
CsaV3_3G008330 Cucumis sativus L. HOM05D001597 ORTHO05D001512 5.8e-06 57.4 167 29.9
Phvul.010G108100 Phaseolus vulgaris HOM05D001597 ORTHO05D001512 5.8e-06 57.4 168 31.5
GSVIVG01027032001 Vitis vinifera HOM05D001597 ORTHO05D001512 5.8e-06 57.4 226 26.1
ClCG05G001010 Citrullus lanatus HOM05D001597 ORTHO05D001512 7.6e-06 57.0 167 29.9
MELO3C006051.2 Cucumis melo HOM05D001597 ORTHO05D001512 7.6e-06 57.0 167 29.9
Glyma.07G061000 Glycine max HOM05D001597 ORTHO05D001512 7.6e-06 57.0 170 31.2
Glyma.16G029600 Glycine max HOM05D001597 ORTHO05D001512 7.6e-06 57.0 170 30.6
Nitab4.5_0005829g0020 Nicotiana tabacum HOM05D000563 ORTHO05D000536 7.6e-06 57.0 144 31.2
PGSC0003DMG400000085 Solanum tuberosum HOM05D001597 ORTHO05D001512 7.6e-06 57.0 167 29.9
C04p01730 Brassica napus HOM05D001597 ORTHO05D001512 9.9e-06 56.6 221 29.9
Migut.F00745 Erythranthe guttata HOM05D000563 ORTHO05D000536 9.9e-06 56.6 143 30.1
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 9.9e-06 56.6 167 29.9
VMungo0331G0273 Vigna mungo HOM05D001597 ORTHO05D001512 9.9e-06 56.6 170 30.6


User provided reference genes

Program Settings