Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1356.7 691 100.0
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1158.7 692 84.4
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1152.5 692 84.2
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1151.3 690 85.1
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1150.2 692 83.8
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1131.3 696 82.6
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1129.8 698 82.1
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1129.0 695 82.3
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1128.6 694 82.9
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1127.5 695 82.3
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1126.3 735 79.5
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1121.7 690 82.0
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1119.8 692 81.9
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1117.4 692 81.8
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1111.7 690 82.0
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1107.8 687 82.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1105.5 695 81.3
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1105.5 696 80.5
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 0.0e+00 1105.1 689 81.9
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1104.0 729 78.1
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1103.6 690 80.6
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1103.6 691 81.2
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1103.6 691 81.0
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 0.0e+00 1102.8 690 81.0
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1102.0 690 81.2
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1102.0 687 81.2
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1099.7 690 81.0
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1099.0 686 81.6
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 0.0e+00 1098.6 693 80.7
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 0.0e+00 1098.2 689 81.3
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 0.0e+00 1097.8 691 80.6
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1095.1 694 80.0
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 0.0e+00 1093.2 690 79.9
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1092.8 691 80.3
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1089.3 690 80.7
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 0.0e+00 1087.0 734 77.0
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1085.9 691 79.5
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 693 79.5
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 0.0e+00 1084.7 689 79.8
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 0.0e+00 1084.3 673 81.3
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 0.0e+00 1084.3 692 78.3
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1082.4 696 79.2
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 0.0e+00 1081.6 693 79.2
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 0.0e+00 1081.2 687 80.1
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1080.9 686 80.3
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1080.9 687 80.1
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 0.0e+00 1078.9 693 79.1
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1078.5 686 80.2
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 0.0e+00 1078.2 692 80.3
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1075.5 689 80.0
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.9e-311 1072.0 690 79.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 4.7e-310 1067.4 690 79.0
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 7.9e-310 1066.6 692 79.5
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.5e-308 1062.4 695 78.6
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.6e-308 1061.6 723 74.8
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.6e-308 1061.6 694 78.2
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 8.2e-307 1056.6 694 78.0
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 7.0e-306 1053.5 693 78.4
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 9.1e-306 1053.1 792 69.7
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.2e-305 1052.7 689 78.5
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 705 77.2
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 5.9e-305 1050.4 647 81.8
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.7e-304 1048.9 691 78.1
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 2.5e-303 1045.0 691 77.4
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.2e-299 1031.9 693 76.8
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 4.8e-299 1030.8 691 76.0
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.1e-298 1029.6 691 76.0
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 3.1e-298 1028.1 690 75.9
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 4.1e-298 1027.7 690 76.1
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.7e-297 1025.0 696 75.6
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.5e-295 1019.2 692 75.7
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 3.6e-294 1014.6 691 75.0
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 1.8e-293 1012.3 691 74.5
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 2.6e-292 1008.4 694 74.5
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 7.5e-292 1006.9 688 74.9
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 7.5e-292 1006.9 690 74.8
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 3.7e-291 1004.6 691 74.2
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 4.9e-291 1004.2 691 74.2
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 1.4e-290 1002.7 691 74.1
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 1.4e-290 1002.7 691 74.1
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 1.8e-290 1002.3 692 74.0
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 1.9e-287 992.3 692 73.4
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 1.2e-286 989.6 691 73.2
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 9.8e-276 953.4 1197 48.7
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 8.3e-275 950.3 702 69.7
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.5e-273 944.9 692 71.5
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 8.6e-272 940.3 549 86.9
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 2.1e-262 909.1 685 67.7
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 2.1e-257 892.5 761 65.0
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 2.4e-245 852.4 721 61.7
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.9e-243 844.7 569 75.4
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 1.8e-237 826.2 723 59.1
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.7e-235 819.7 537 78.8
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 2.0e-228 796.2 511 79.1
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.1e-221 773.9 469 82.7
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 9.0e-221 770.8 515 75.7
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 5.0e-211 738.4 642 59.0
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 5.7e-207 724.9 695 57.3
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.2e-193 680.6 418 81.3
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.2e-141 506.5 717 41.4
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.6e-137 494.2 687 46.6
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 2.4e-136 490.3 702 41.3
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 7.8e-132 475.3 698 40.1
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.9e-130 470.7 687 45.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 2.6e-127 460.3 268 87.7
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 5.6e-122 442.6 274 83.6
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.1e-120 436.8 653 44.9
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 2.8e-113 413.7 473 48.6
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.6e-108 396.4 232 86.2
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 3.2e-101 373.6 421 55.3
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.5e-95 354.8 244 73.8
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 4.5e-95 353.2 679 37.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.4e-85 321.6 219 75.3
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 9.7e-82 308.9 298 60.4
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 2.9e-70 270.8 203 71.4
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 3.7e-65 253.8 167 73.7
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 5.4e-48 196.8 137 75.9
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 5.4e-48 196.8 137 75.9
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.3e-38 165.6 118 76.3
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 6.6e-38 163.3 101 80.2
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 9.2e-32 142.9 115 60.0
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.9e-25 120.6 84 64.3
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 3.5e-23 114.4 201 41.3
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.0e-18 98.6 69 75.4
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.7e-17 95.5 64 78.1
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 5.4e-16 90.5 149 35.6


User provided reference genes

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