Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.4e-203 712.6 341 100.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.1e-187 659.8 339 91.7
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-186 656.4 339 91.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.1e-184 649.8 340 90.3
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.5e-184 649.4 340 90.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.6e-184 648.7 354 87.3
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 1.3e-183 646.4 340 89.1
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-183 646.4 340 89.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 6.3e-183 644.0 341 89.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.4e-182 642.1 341 88.3
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 5.3e-182 641.0 341 87.7
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 7.0e-182 640.6 341 87.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.6e-181 639.4 341 87.7
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 4.5e-181 637.9 340 87.4
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.5e-181 637.9 341 87.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 7.7e-181 637.1 341 87.7
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 7.7e-181 637.1 341 88.0
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.3e-180 636.3 341 86.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.7e-180 636.0 341 87.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.2e-180 635.6 340 86.8
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.5e-180 633.6 341 86.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.1e-179 633.3 340 86.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.1e-179 633.3 341 86.8
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.1e-179 633.3 340 87.1
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.1e-179 633.3 340 86.5
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.5e-179 632.9 340 86.5
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.5e-179 632.9 340 87.1
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.9e-179 632.5 340 87.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.9e-179 632.5 341 87.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.2e-179 631.3 339 87.3
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.2e-179 631.3 339 87.3
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.2e-179 631.3 340 86.8
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 5.5e-179 630.9 341 86.2
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 7.2e-179 630.6 340 86.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 9.4e-179 630.2 339 87.6
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.2e-178 629.8 341 86.8
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.2e-178 629.8 340 86.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.2e-178 629.8 340 87.6
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.6e-178 628.2 341 85.0
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 6.1e-178 627.5 340 85.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.1e-178 627.5 341 85.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 8.0e-178 627.1 341 85.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.0e-177 626.7 341 85.6
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.0e-177 626.7 339 86.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.0e-177 624.8 341 85.6
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 4.0e-177 624.8 341 85.6
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 6.7e-177 624.0 341 85.3
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.7e-176 620.2 340 86.2
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.3e-175 619.8 341 84.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.2e-175 619.0 340 85.9
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.7e-175 618.2 340 84.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 6.3e-175 617.5 340 85.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-174 616.3 330 85.8
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.8e-174 615.9 340 85.6
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.1e-174 615.1 341 83.6
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 3.1e-174 615.1 398 74.6
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 7.0e-174 614.0 340 84.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 9.1e-174 613.6 340 84.4
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.0e-173 612.5 340 82.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.5e-173 611.3 341 82.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 5.9e-173 610.9 341 83.0
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.3e-172 609.8 340 82.6
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.7e-172 609.4 341 84.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.2e-172 609.0 339 83.2
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.9e-172 608.6 339 82.9
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.9e-172 608.6 339 82.3
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 6.5e-172 607.4 339 82.9
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.5e-172 607.4 340 81.8
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 8.5e-172 607.1 339 82.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.9e-171 605.9 339 82.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.9e-171 605.9 379 76.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.5e-171 605.5 339 82.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.5e-171 605.5 339 82.6
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 4.2e-171 604.7 340 83.5
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 4.2e-171 604.7 339 82.6
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 9.4e-171 603.6 339 82.0
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.1e-170 602.4 340 81.8
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-170 602.1 339 82.3
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-169 599.7 349 81.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 5.2e-169 597.8 340 81.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.5e-168 596.3 340 81.8
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.0e-168 595.9 340 81.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.8e-167 592.0 354 78.8
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 6.3e-167 590.9 412 71.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.8e-166 589.3 340 80.9
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.8e-166 589.3 427 69.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.2e-165 586.6 341 79.2
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.7e-165 585.5 340 79.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.9e-164 582.0 355 78.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.5e-164 580.9 340 78.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 9.4e-163 577.0 341 78.9
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.2e-162 576.6 316 85.1
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.1e-162 575.9 312 86.5
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.1e-162 575.9 341 79.2
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.1e-158 562.0 322 81.7
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 2.0e-157 559.3 295 88.5
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 4.5e-157 558.1 308 83.8
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 5.9e-157 557.8 340 76.8
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.0e-156 557.0 341 77.1
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 8.6e-156 553.9 343 75.2
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.5e-155 552.4 342 79.2
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 4.3e-155 551.6 345 73.9
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.1e-154 549.3 309 81.9
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.8e-154 548.9 339 76.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.4e-152 542.0 339 73.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.2e-150 535.4 341 73.3
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.4e-150 534.6 339 72.3
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.6e-147 524.6 328 78.4
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-145 520.0 339 69.3
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-145 519.6 339 70.2
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.3e-145 519.2 341 71.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.0e-140 503.8 339 68.7
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.7e-138 495.0 341 66.6
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.3e-135 486.9 349 65.0
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.9e-135 485.0 341 65.1
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.1e-130 469.5 339 63.1
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.1e-130 469.5 341 65.7
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 6.2e-130 468.0 243 87.2
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.0e-124 450.7 360 63.3
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.7e-122 441.8 291 73.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.1e-122 441.0 343 61.2
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-114 417.2 352 61.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 6.0e-109 398.3 196 92.9
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.3e-107 392.5 243 73.3
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-105 386.7 254 70.1
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 7.6e-104 381.3 342 53.2
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 2.3e-92 343.2 228 72.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.6e-77 292.7 157 87.3
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.0e-72 276.9 151 82.8
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.0e-71 274.6 147 86.4
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.6e-69 266.2 197 67.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.8e-66 256.5 145 84.1
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.9e-63 246.5 131 87.8
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.8e-60 235.0 134 84.3
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.3e-50 204.5 112 83.0
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.1e-49 199.9 137 74.5
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.6e-48 197.6 107 79.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 9.8e-43 178.3 95 90.5
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 4.5e-40 169.5 137 65.0
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.5e-38 163.7 93 82.8
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.3e-38 162.2 88 85.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 3.7e-34 149.8 82 90.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 4.6e-32 142.9 165 49.1
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.1e-22 111.7 69 69.6
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-22 111.7 67 68.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-20 105.1 72 63.9
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-20 104.8 63 76.2
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 6.8e-20 102.4 57 73.7
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.2e-19 101.7 133 42.9
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.0e-15 88.6 121 44.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-12 77.8 36 86.1
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 5.2e-12 76.3 38 81.6
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.2e-10 70.9 35 88.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-09 67.0 81 46.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 2.1e-08 64.3 69 52.2
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 3.0e-07 60.5 35 74.3


User provided reference genes

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