Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.4e-268 929.1 481 100.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 4.9e-189 664.8 485 73.6
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 3.5e-179 632.1 484 68.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.8e-176 622.5 483 69.6
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.1e-172 610.5 479 67.4
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.4e-172 608.2 481 67.2
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.7e-171 605.9 480 68.8
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 7.8e-171 604.4 476 69.5
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.9e-169 599.7 465 69.9
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 4.4e-166 588.6 482 65.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 8.3e-165 584.3 473 66.4
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.4e-164 582.8 477 66.0
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.7e-162 576.6 481 65.5
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 8.6e-162 574.3 484 64.0
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.1e-161 573.9 447 70.2
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.1e-161 573.9 481 64.0
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 3.3e-161 572.4 481 64.7
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.3e-161 572.4 484 63.6
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 9.6e-161 570.9 475 65.5
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.8e-159 566.6 477 62.5
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.1e-159 565.8 482 64.1
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 5.2e-159 565.1 484 64.3
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 8.9e-159 564.3 476 64.3
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.3e-157 560.5 476 63.4
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.1e-155 553.1 481 60.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 6.0e-155 551.6 468 63.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.0e-154 550.8 470 62.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.0e-154 549.3 478 62.1
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.9e-153 546.6 485 61.6
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.5e-153 546.2 481 61.5
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.3e-152 543.9 485 61.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.1e-152 543.1 483 63.6
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 4.8e-152 542.0 475 61.3
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.8e-152 542.0 481 61.1
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.5e-150 537.0 476 59.7
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 5.8e-150 535.0 481 58.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.7e-149 533.5 479 59.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-148 530.8 481 58.4
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.1e-148 530.8 481 58.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.4e-148 530.4 704 46.7
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 3.2e-148 529.3 480 61.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.2e-148 528.9 481 58.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.3e-146 523.9 483 59.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.9e-146 522.3 480 57.9
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.5e-145 519.6 389 71.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 4.8e-144 515.4 485 59.0
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.1e-143 514.2 424 64.9
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 2.4e-143 513.1 485 58.4
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.0e-142 510.0 483 57.6
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 3.4e-142 509.2 483 57.6
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.8e-142 508.4 476 58.0
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.3e-141 507.3 476 56.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 2.9e-141 506.1 482 59.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.1e-140 504.2 481 60.1
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.4e-140 503.1 476 57.6
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.4e-140 503.1 476 57.6
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.4e-140 503.1 445 62.7
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.2e-140 502.7 476 56.9
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 9.3e-140 501.1 485 56.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 7.9e-139 498.0 477 57.2
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.0e-138 497.7 484 58.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.3e-138 497.3 476 56.9
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.3e-138 496.5 487 57.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.0e-138 496.1 483 58.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-137 493.4 483 57.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 4.3e-137 492.3 476 56.9
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 2.0e-134 483.4 479 56.2
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 6.5e-133 478.4 409 63.1
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.9e-132 476.9 476 56.9
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-131 474.2 476 56.1
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.1e-129 467.6 546 52.7
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.7e-128 462.6 389 63.2
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.1e-127 459.5 475 54.7
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.7e-125 453.8 445 56.0
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.4e-124 450.7 408 60.0
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.5e-124 449.9 514 51.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.1e-123 445.3 561 46.9
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 5.7e-121 438.7 457 55.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.4e-121 438.3 433 57.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 8.2e-120 434.9 429 56.4
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.5e-118 430.6 381 62.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.5e-118 430.6 476 52.1
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.2e-117 426.8 443 54.0
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 6.5e-117 425.2 399 60.7
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 3.6e-115 419.5 407 56.5
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.2e-110 404.4 481 48.6
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 5.9e-110 402.1 333 62.2
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.3e-109 401.0 302 66.6
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 3.6e-107 392.9 509 49.7
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.9e-107 391.7 476 50.2
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 5.1e-106 389.0 385 56.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.7e-104 384.0 368 56.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.5e-102 377.5 502 46.2
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.5e-102 377.5 431 52.0
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.5e-102 376.3 424 52.1
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 3.5e-102 376.3 363 57.3
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.7e-101 374.0 286 67.1
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 8.5e-101 371.7 496 45.2
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.2e-99 367.9 302 62.9
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 5.3e-95 352.4 492 45.3
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.0e-90 336.3 275 64.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.3e-88 331.3 295 60.0
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 4.8e-88 329.3 345 52.2
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.1e-87 326.2 312 59.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-84 318.2 265 61.9
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.2e-80 303.9 493 41.0
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.1e-79 301.6 394 47.2
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 3.1e-79 300.1 266 59.4
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 7.7e-78 295.4 240 61.7
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.9e-76 290.8 323 54.8
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 9.2e-71 271.9 457 39.8
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.0e-70 270.8 532 37.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.4e-65 253.1 167 71.3
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 7.0e-63 245.7 309 47.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.2e-63 245.4 308 49.7
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.3e-56 224.9 211 61.1
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.1e-50 205.3 163 65.0
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.3e-50 204.1 431 36.4
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 3.0e-45 187.2 177 59.9
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.8e-41 172.9 106 79.2
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 3.1e-34 150.6 454 32.8
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.9e-34 149.4 147 57.8
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.7e-32 144.8 579 28.2
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.1e-29 133.3 168 50.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 4.0e-26 123.6 384 29.4
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.6e-25 120.9 147 49.7
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.6e-22 111.7 146 51.4
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 6.0e-22 109.8 126 49.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.3e-21 108.6 158 48.1
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.8e-21 108.2 119 52.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.1e-20 105.5 84 64.3
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-20 105.5 69 75.4
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 6.9e-18 96.3 136 39.0
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-17 95.1 75 64.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-17 95.1 75 64.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.4e-17 94.0 75 62.7
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.9e-16 90.9 75 62.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.8e-13 81.6 83 55.4
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.0e-13 80.9 82 59.8
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.5e-12 77.8 176 34.7
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.8e-10 71.6 80 51.2
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 1.7e-08 65.1 46 67.4
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-08 63.2 47 59.6
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 4.6e-06 57.0 32 78.1


User provided reference genes

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