Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 1.5e-163 580.9 327 100.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 1.0e-79 302.4 327 51.4
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 4.2e-78 297.0 325 57.5
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 8.0e-77 292.7 325 56.0
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 4.0e-76 290.4 327 49.8
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 1.1e-73 282.3 327 52.9
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 3.0e-71 274.2 302 56.0
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 3.9e-71 273.9 319 49.8
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 9.8e-67 259.2 320 48.1
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.1e-65 255.8 324 45.4
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 3.2e-65 254.2 325 44.9
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 1.3e-63 248.8 307 47.6
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 1.7e-63 248.4 327 52.0
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 1.7e-63 248.4 314 46.2
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.5e-62 242.7 324 44.4
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 8.1e-61 239.6 271 48.7
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 5.2e-60 236.9 271 48.7
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 1.5e-59 235.3 304 45.7
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 2.6e-59 234.6 253 55.7
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 4.4e-59 233.8 317 45.1
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 2.4e-57 228.0 299 42.8
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 2.1e-56 224.9 238 50.4
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 6.6e-55 219.9 321 48.0
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 1.6e-53 215.3 278 44.6
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 1.6e-53 215.3 245 48.2
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.1e-52 212.6 301 43.5
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 1.4e-52 212.2 277 43.7
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 2.3e-52 211.5 294 49.3
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 2.3e-52 211.5 294 49.3
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 2.3e-52 211.5 189 57.1
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 1.2e-51 209.1 189 65.6
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 2.0e-51 208.4 238 47.9
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 2.6e-51 208.0 321 43.3
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 2.6e-51 208.0 311 41.2
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 3.4e-51 207.6 287 49.1
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 9.9e-51 206.1 185 55.1
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 2.2e-50 204.9 235 46.4
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 6.4e-50 203.4 249 47.0
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 8.4e-50 203.0 243 47.7
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 1.9e-49 201.8 185 56.2
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 4.1e-49 200.7 254 49.6
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 3.5e-48 197.6 256 44.9
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 7.8e-48 196.4 290 45.9
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 1.0e-47 196.1 192 60.9
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 1.1e-46 192.6 251 43.4
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 1.1e-46 192.6 251 43.4
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 2.4e-44 184.9 189 52.9
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 6.8e-44 183.3 304 41.4
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 6.8e-44 183.3 304 41.4
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 5.8e-43 180.3 307 43.6
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.1e-41 173.3 183 50.3
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.1e-41 173.3 183 50.3
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.1e-41 173.3 183 50.3
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 1.6e-40 172.2 244 41.8
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-40 171.0 183 49.7
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.5e-40 171.0 183 49.7
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 8.7e-39 166.4 186 44.6
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 4.3e-38 164.1 310 37.1
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 9.0e-36 156.4 191 58.1
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 4.9e-34 150.6 189 42.9
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 8.4e-34 149.8 304 34.2
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 5.4e-33 147.1 189 41.3
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 1.6e-32 145.6 157 61.1
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.1e-32 145.2 246 40.2
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 2.7e-32 144.8 201 42.8
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.5e-27 127.5 191 41.4
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 8.4e-26 123.2 189 41.3
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 8.4e-26 123.2 178 37.1
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.5e-22 112.5 169 37.3
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 9.6e-22 109.8 211 33.2
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 1.6e-21 109.0 129 42.6
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 6.0e-16 90.5 180 37.8
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 1.8e-15 89.0 95 62.1
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 2.3e-15 88.6 172 28.5
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 8.2e-13 80.1 174 30.5
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.8e-12 79.0 160 30.6
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 1.8e-12 79.0 111 38.7
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.2e-11 76.3 193 27.5
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 4.5e-11 74.3 147 31.3
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 7.6e-11 73.6 127 33.1
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 7.6e-11 73.6 169 28.4
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.7e-10 72.4 161 29.8
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 2.2e-10 72.0 197 27.9
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 2.2e-10 72.0 173 30.1
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 5.0e-10 70.9 170 25.3
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.0e-10 70.9 179 27.9
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 8.4e-10 70.1 161 26.1
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 8.4e-10 70.1 63 55.6
SGA_v2.0_scaffold484G52360 Striga asiatica HOM05D017480 ORTHO05D026194 1.1e-09 69.7 50 66.0
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.4e-09 69.3 157 25.5
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.9e-09 68.9 148 31.1
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 1.9e-09 68.9 161 26.7
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.9e-09 68.9 152 27.6
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.9e-09 68.9 171 24.6
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 2.5e-09 68.6 147 27.9
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 4.2e-09 67.8 138 29.0
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 4.2e-09 67.8 195 24.6
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 9.3e-09 66.6 138 28.3
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 9.3e-09 66.6 138 28.3
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 9.3e-09 66.6 195 25.1
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 9.3e-09 66.6 164 27.4
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 1.6e-08 65.9 147 27.9
SalBow6G6080 Salvia bowleyana HOM05D007893 ORTHO05D010042 2.1e-08 65.5 133 33.8
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 2.7e-08 65.1 151 30.5
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 3.6e-08 64.7 166 27.7
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.6e-08 64.3 171 29.2
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 7.9e-08 63.5 164 29.3
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 7.9e-08 63.5 149 26.2
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 2.3e-07 62.0 174 29.3
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 2.3e-07 62.0 179 26.3
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 3.0e-07 61.6 158 28.5
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 3.0e-07 61.6 185 28.1
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 3.0e-07 61.6 136 33.1
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 3.9e-07 61.2 179 26.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 3.9e-07 61.2 205 26.8
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.9e-07 61.2 206 26.2
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 3.9e-07 61.2 151 27.8
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 5.1e-07 60.8 179 25.7
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 5.1e-07 60.8 117 28.2
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.1e-07 60.8 153 29.4
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 6.7e-07 60.5 151 25.2
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 6.7e-07 60.5 88 37.5
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 8.7e-07 60.1 204 24.5
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 1.1e-06 59.7 164 25.6
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 1.1e-06 59.7 118 28.8
SEGI_23973 Sequoiadendron giganteum HOM05D007063 ORTHO05D008822 1.1e-06 59.7 111 32.4
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 1.1e-06 59.7 154 26.6
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.5e-06 59.3 160 22.5
CDE12G0616 Ceratophyllum demersum HOM05D007496 ORTHO05D009479 1.5e-06 59.3 77 41.6
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 1.9e-06 58.9 126 29.4
Os05g0275100 Oryza sativa ssp. japonica HOM05D007639 ORTHO05D009509 1.9e-06 58.9 139 30.9
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.5e-06 58.5 150 24.0
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 3.3e-06 58.2 88 38.6
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 3.3e-06 58.2 144 25.0
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 3.3e-06 58.2 152 24.3
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 3.3e-06 58.2 151 25.2
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 3.3e-06 58.2 147 24.5
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 4.3e-06 57.8 90 35.6
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 4.3e-06 57.8 106 32.1
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 4.3e-06 57.8 167 26.9
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 4.3e-06 57.8 206 25.7
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 5.7e-06 57.4 226 25.7
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 5.7e-06 57.4 166 24.7
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 5.7e-06 57.4 173 26.0
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 5.7e-06 57.4 107 31.8
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 5.7e-06 57.4 143 25.2
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 5.7e-06 57.4 92 41.3
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 5.7e-06 57.4 136 27.9
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 7.4e-06 57.0 162 27.8
Os06g0565000 Oryza sativa ssp. japonica HOM05D057789 ORTHO05D009479 7.4e-06 57.0 97 35.1
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 7.4e-06 57.0 139 26.6
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 7.4e-06 57.0 172 25.0
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 9.7e-06 56.6 142 27.5
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 9.7e-06 56.6 119 28.6
MD15G1444300 Malus domestica HOM05D007639 ORTHO05D009509 9.7e-06 56.6 114 33.3
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 9.7e-06 56.6 116 32.8
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 9.7e-06 56.6 148 25.0


User provided reference genes

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