Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 2.8e-188 661.8 330 100.0
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.4e-110 402.9 305 66.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.3e-96 355.9 321 57.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.1e-94 350.9 320 57.5
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.0e-93 346.7 322 53.7
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.8e-92 342.4 322 56.2
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.3e-89 333.2 321 54.8
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 3.0e-89 332.8 308 56.8
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.9e-89 332.4 308 58.1
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.1e-88 330.9 321 55.8
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 4.5e-85 318.9 310 53.2
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 5.9e-85 318.5 262 58.8
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 6.5e-84 315.1 315 52.4
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 8.5e-84 314.7 309 53.7
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.4e-83 313.9 325 52.6
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.9e-83 313.5 316 52.5
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-83 313.5 316 52.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 5.5e-83 312.0 280 57.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.4e-83 311.2 316 52.2
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-82 310.8 309 52.1
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 4.6e-82 308.9 321 51.4
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.0e-81 307.8 297 52.2
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.0e-81 307.8 297 52.2
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 6.7e-81 305.1 278 54.3
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.1e-80 304.3 302 55.3
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.5e-80 303.1 321 51.7
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.2e-79 298.1 301 54.5
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 3.1e-78 296.2 282 52.5
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 7.7e-77 291.6 347 49.0
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 8.5e-76 288.1 250 56.4
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 8.5e-76 288.1 312 50.3
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.9e-75 287.0 311 48.9
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.5e-75 286.6 312 49.4
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 7.2e-75 285.0 287 52.6
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.6e-74 282.7 322 48.8
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 6.1e-74 282.0 349 46.4
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.3e-73 280.0 257 53.7
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.0e-73 279.6 257 54.1
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.9e-73 279.3 257 53.7
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.1e-72 277.7 307 48.5
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 2.0e-72 276.9 314 47.8
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 2.6e-72 276.6 287 52.3
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 4.4e-72 275.8 317 49.5
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 1.3e-71 274.2 263 52.9
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 2.8e-71 273.1 317 47.9
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-70 271.2 291 48.1
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.4e-70 270.8 277 50.2
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.1e-70 269.6 248 54.8
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 5.3e-70 268.9 323 48.3
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 7.0e-70 268.5 213 62.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.2e-69 267.7 319 47.6
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.2e-69 267.7 264 52.3
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.5e-69 267.3 294 47.3
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.0e-69 266.9 267 52.4
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 5.9e-69 265.4 311 47.6
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.7e-68 263.8 266 50.4
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.7e-68 263.8 266 50.4
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.7e-68 263.8 266 50.4
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.7e-68 263.8 264 51.5
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.8e-68 262.7 310 45.5
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 8.5e-68 261.5 238 56.3
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.9e-67 260.4 319 45.5
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.1e-66 256.9 254 51.2
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 4.7e-66 255.8 262 48.9
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 6.1e-66 255.4 314 43.9
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.0e-66 255.0 260 49.6
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 5.2e-65 252.3 327 46.5
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 5.2e-65 252.3 299 46.8
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-64 251.1 294 49.7
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.1e-64 251.1 278 47.1
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.1e-64 251.1 306 46.1
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.0e-64 250.4 294 49.7
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 2.0e-64 250.4 315 45.4
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.4e-64 249.2 257 48.6
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 5.7e-64 248.8 274 50.4
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.7e-63 247.3 281 48.0
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 4.8e-63 245.7 253 51.0
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 6.3e-63 245.4 265 50.6
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.8e-62 243.8 322 43.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.4e-62 243.4 269 46.8
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.2e-61 241.1 251 50.2
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.3e-60 237.7 264 51.9
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.7e-60 237.3 269 48.3
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.5e-59 234.2 217 59.0
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 2.3e-57 226.9 318 41.2
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-53 213.0 254 46.5
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 4.5e-53 212.6 190 54.7
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.7e-52 210.7 294 41.5
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.0e-52 209.1 216 55.6
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 8.5e-52 208.4 285 44.9
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-51 206.1 247 45.7
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-51 206.1 247 45.7
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-51 205.3 247 45.3
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-51 205.3 247 45.3
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-51 205.3 247 45.3
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.4e-51 204.9 247 45.3
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-50 204.5 247 45.3
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-50 204.5 261 44.1
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-50 204.1 247 45.3
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-50 204.1 257 43.2
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.7e-50 203.4 296 41.2
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.7e-50 202.6 247 45.7
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 8.0e-50 201.8 255 45.9
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.0e-49 201.4 299 41.8
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 4.0e-49 199.5 275 43.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 8.8e-49 198.4 301 41.2
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.4e-48 196.4 308 40.6
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 3.4e-48 196.4 300 42.7
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 5.7e-48 195.7 309 41.7
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 3.7e-47 193.0 266 44.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 4.9e-47 192.6 299 39.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.4e-46 190.3 288 38.9
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 4.1e-46 189.5 288 38.9
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.0e-46 188.7 231 45.9
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.7e-45 186.8 276 39.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 5.9e-45 185.7 264 40.9
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.9e-45 185.7 242 44.2
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 7.7e-45 185.3 270 40.0
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.7e-44 184.1 291 38.1
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.7e-44 184.1 291 38.1
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.7e-44 184.1 276 39.5
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.3e-44 183.7 291 38.1
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 6.6e-44 182.2 246 43.1
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-39 167.9 182 47.3
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.3e-39 165.6 272 39.3
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.3e-39 165.2 166 50.6
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-38 164.5 166 50.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.0e-38 162.2 166 50.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 9.2e-38 161.8 290 34.8
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.6e-37 161.0 266 39.5
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.0e-37 160.6 221 42.5
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.3e-36 157.1 131 58.8
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.6e-34 151.0 236 40.3
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 6.2e-34 149.1 212 40.6
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.9e-31 140.2 142 51.4
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-27 128.3 146 46.6
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-23 113.6 136 44.9
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 6.0e-21 105.9 198 31.3
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.7e-18 96.3 101 49.5
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 6.8e-17 92.4 200 31.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.4e-14 84.7 198 30.3
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.6e-13 79.7 89 44.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.8e-09 67.8 85 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.4e-09 67.4 151 32.5


User provided reference genes

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