Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.0e-301 1039.3 531 100.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.7e-193 679.1 533 66.0
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 5.4e-181 638.3 533 63.6
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 4.6e-180 635.2 534 64.4
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 7.8e-180 634.4 534 62.7
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 8.9e-176 620.9 546 61.7
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.4e-175 618.6 535 60.2
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.3e-174 617.1 548 63.3
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 3.7e-174 615.5 539 61.2
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 8.3e-174 614.4 546 61.9
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.1e-173 614.0 544 60.8
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.1e-173 614.0 534 61.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.6e-172 610.1 529 62.6
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 2.7e-172 609.4 540 60.0
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.7e-171 606.7 548 61.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.5e-170 603.6 539 61.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 1.2e-169 600.5 530 62.3
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 4.0e-168 595.5 543 60.4
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.2e-167 594.0 529 60.9
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.0e-167 593.2 683 52.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.6e-167 592.8 539 59.2
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 2.6e-167 592.8 541 59.3
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.8e-167 591.7 531 60.5
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.3e-166 590.5 532 60.2
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.3e-166 590.5 539 59.7
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.9e-166 589.3 531 60.1
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.7e-166 589.0 544 57.9
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.4e-165 587.0 537 59.8
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.4e-165 587.0 532 59.8
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.4e-165 586.3 534 59.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 9.2e-165 584.3 534 58.6
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.2e-164 583.9 538 57.1
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.7e-164 582.8 538 56.9
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 6.0e-164 581.6 542 57.7
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 3.0e-163 579.3 542 57.4
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 5.1e-163 578.6 542 58.5
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.6e-161 573.5 542 58.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 2.3e-160 569.7 535 56.6
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.2e-159 567.4 542 57.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.6e-159 566.2 528 58.0
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.6e-159 566.2 542 58.3
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 4.4e-159 565.5 522 59.6
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 9.9e-159 564.3 545 58.0
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 8.4e-158 561.2 523 59.7
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 7.1e-157 558.1 510 60.0
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 9.2e-157 557.8 539 56.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.2e-156 557.4 517 59.2
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.2e-156 557.4 545 57.1
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.1e-156 556.6 524 59.5
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 7.8e-156 554.7 528 57.0
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.7e-155 553.5 543 56.4
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 3.0e-155 552.7 543 56.9
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 5.1e-155 552.0 523 59.3
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.9e-154 550.1 538 56.3
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 4.3e-154 548.9 524 59.2
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.6e-153 547.0 524 59.0
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 2.1e-153 546.6 573 53.1
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 8.1e-153 544.7 523 58.3
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 2.4e-152 543.1 534 56.0
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 3.4e-151 539.3 524 57.4
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 3.5e-148 529.3 534 55.6
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 4.6e-148 528.9 534 54.3
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 5.1e-147 525.4 463 60.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.5e-146 523.1 570 52.6
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.5e-146 523.1 534 53.9
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.3e-145 520.8 525 55.8
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 2.8e-145 519.6 524 55.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 1.4e-144 517.3 525 54.9
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 4.0e-144 515.8 524 55.3
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 6.9e-144 515.0 525 55.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.4e-143 512.7 443 60.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 6.4e-142 508.4 524 54.8
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.1e-141 505.0 477 57.7
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.2e-140 504.2 525 54.1
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 3.9e-139 499.2 523 55.3
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.1e-139 498.8 540 52.4
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 7.4e-138 495.0 524 54.6
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 7.4e-138 495.0 524 54.0
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.6e-137 493.8 524 52.7
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.1e-137 493.4 524 54.6
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 8.1e-137 491.5 524 52.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 3.1e-136 489.6 523 53.9
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.1e-136 489.6 523 53.9
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 6.9e-136 488.4 523 53.2
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.2e-135 487.6 524 52.7
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 2.0e-135 486.9 538 52.4
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 9.9e-135 484.6 484 53.7
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 4.9e-134 482.3 525 51.6
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.4e-133 479.9 524 52.9
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 8.7e-131 471.5 506 54.7
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.1e-128 464.5 475 55.4
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.4e-120 437.6 541 47.0
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 1.2e-119 434.5 352 63.6
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.4e-119 433.0 464 51.3
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 5.5e-117 425.6 383 61.9
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.9e-109 400.6 526 47.5
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.3e-104 382.5 549 43.7
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.6e-100 370.9 318 62.6
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.1e-96 358.2 365 53.2
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 5.5e-93 345.9 448 44.6
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.2e-92 344.7 371 53.6
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.8e-91 340.9 281 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 2.4e-88 330.5 557 39.5
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 3.1e-88 330.1 554 39.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 5.9e-87 325.9 573 37.5
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.1e-80 303.1 380 47.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 4.1e-80 303.1 321 54.2
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 3.5e-79 300.1 442 41.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.7e-76 289.7 279 57.3
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 3.1e-72 276.9 422 38.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.1e-68 264.2 217 62.2
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 3.0e-67 260.4 278 52.5
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.4e-64 251.5 263 51.0
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.2e-64 250.4 266 55.6
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.6e-63 246.5 159 73.6
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 3.4e-58 230.3 256 53.1
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.4e-58 229.9 159 70.4
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 9.8e-58 228.8 335 44.2
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 5.4e-56 223.0 419 34.4
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.5e-53 214.9 156 66.0
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.1e-51 208.8 214 50.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.6e-44 183.7 159 61.0
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 3.4e-42 177.2 192 51.0
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 9.2e-40 169.1 123 69.1
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 7.8e-39 166.0 263 43.7
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 5.1e-38 163.3 118 68.6
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 2.6e-34 151.0 137 58.4
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.7e-25 121.7 257 39.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.9e-25 120.9 257 39.3
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 5.6e-21 106.7 121 53.7
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 9.3e-16 89.4 103 50.5
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 7.9e-15 86.3 168 39.9
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.6e-12 78.6 94 51.1
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.6e-12 78.6 94 51.1
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.6e-10 71.2 96 45.8
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.0e-06 59.3 81 42.0
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 1.0e-06 59.3 135 37.0


User provided reference genes

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