Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 1.8e-60 235.7 119 100.0
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 9.6e-38 160.2 104 80.8
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 1.1e-36 156.8 104 80.8
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 3.8e-34 148.3 108 74.1
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 4.9e-34 147.9 104 72.1
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.8e-31 139.4 105 74.3
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 2.3e-31 139.0 104 71.2
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 6.7e-31 137.5 104 74.0
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.1e-30 136.7 104 73.1
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 4.3e-30 134.8 98 75.5
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 5.7e-30 134.4 105 75.2
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 7.4e-30 134.0 105 71.4
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 9.6e-30 133.7 104 68.3
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.3e-29 133.3 104 70.2
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 1.6e-29 132.9 106 68.9
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 2.1e-29 132.5 105 70.5
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 2.1e-29 132.5 108 70.4
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 6.2e-29 131.0 108 71.3
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 1.1e-28 130.2 105 68.6
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 1.1e-28 130.2 105 68.6
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.8e-28 129.4 110 69.1
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.8e-28 129.4 114 63.2
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 2.4e-28 129.0 103 73.8
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 3.1e-28 128.6 100 73.0
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 5.3e-28 127.9 100 70.0
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 5.3e-28 127.9 105 67.6
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 9.0e-28 127.1 99 70.7
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 1.2e-27 126.7 106 66.0
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.5e-27 126.3 109 67.0
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.0e-27 125.9 103 67.0
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 2.0e-27 125.9 96 69.8
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 3.4e-27 125.2 107 69.2
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 3.4e-27 125.2 105 71.4
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 4.5e-27 124.8 96 68.8
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.8e-27 124.4 107 72.0
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.8e-27 124.4 107 72.0
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 5.8e-27 124.4 105 71.4
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 1.0e-26 123.6 107 72.0
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.0e-26 123.6 105 70.5
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.7e-26 122.9 104 62.5
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.9e-26 122.1 107 70.1
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 2.9e-26 122.1 107 70.1
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.8e-26 121.7 104 62.5
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 3.8e-26 121.7 93 68.8
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 3.8e-26 121.7 108 65.7
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 1.4e-25 119.8 104 64.4
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 1.4e-25 119.8 118 61.9
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 1.9e-25 119.4 97 67.0
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 2.5e-25 119.0 103 62.1
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 1.2e-24 116.7 112 64.3
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 1.2e-24 116.7 99 62.6
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.6e-24 116.3 106 61.3
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 2.1e-24 115.9 105 64.8
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 6.1e-24 114.4 96 67.7
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 1.3e-23 113.2 99 60.6
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 2.3e-23 112.5 103 59.2
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 3.0e-23 112.1 101 61.4
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 3.0e-23 112.1 104 60.6
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 8.7e-23 110.5 84 70.2
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 8.7e-23 110.5 97 64.9
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 1.1e-22 110.2 101 62.4
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 1.1e-22 110.2 96 66.7
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.5e-22 109.8 102 58.8
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 2.5e-22 109.0 100 65.0
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 4.3e-22 108.2 102 58.8
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 1.6e-21 106.3 103 59.2
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 2.2e-21 105.9 104 60.6
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.8e-21 105.5 105 56.2
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 3.7e-21 105.1 101 62.4
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 6.3e-21 104.4 100 57.0
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 8.2e-21 104.0 101 59.4
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 8.2e-21 104.0 103 57.3
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 1.1e-20 103.6 107 57.9
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 2.4e-20 102.4 101 58.4
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 2.4e-20 102.4 100 54.0
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 3.1e-20 102.1 108 56.5
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 3.1e-20 102.1 107 57.9
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 5.3e-20 101.3 108 55.6
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 5.3e-20 101.3 96 59.4
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 6.9e-20 100.9 94 64.9
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 6.9e-20 100.9 110 54.5
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 9.0e-20 100.5 117 53.8
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.2e-19 100.1 96 59.4
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 1.5e-19 99.8 105 52.4
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.5e-19 99.8 110 56.4
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 2.6e-19 99.0 97 58.8
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.5e-19 98.2 111 55.0
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 7.7e-19 97.4 103 54.4
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.3e-18 96.7 104 54.8
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 1.3e-18 96.7 105 56.2
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 3.8e-18 95.1 55 81.8
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 1.1e-17 93.6 105 53.3
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 1.1e-17 93.6 91 58.2
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 1.1e-17 93.6 102 56.9
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 2.5e-17 92.4 111 55.9
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 3.2e-17 92.0 109 53.2
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.2e-17 92.0 94 60.6
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 5.5e-17 91.3 110 54.5
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 5.5e-17 91.3 109 55.0
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 7.2e-17 90.9 109 55.0
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 7.2e-17 90.9 109 55.0
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 7.2e-17 90.9 109 55.0
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 7.2e-17 90.9 109 55.0
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 2.7e-16 89.0 107 57.0
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.6e-16 88.6 97 54.6
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 1.0e-15 87.0 110 51.8
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 1.8e-15 86.3 109 53.2
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 1.8e-15 86.3 109 53.2
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 1.8e-15 86.3 109 54.1
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 2.3e-15 85.9 100 58.0
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 2.3e-15 85.9 99 51.5
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 2.3e-15 85.9 99 55.6
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 3.0e-15 85.5 108 50.9
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 3.9e-15 85.1 93 59.1
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 5.1e-15 84.7 98 53.1
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 5.1e-15 84.7 104 49.0
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 8.8e-15 84.0 107 51.4
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 1.5e-14 83.2 100 55.0
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 1.5e-14 83.2 100 55.0
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 1.5e-14 83.2 97 53.6
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 2.5e-14 82.4 110 51.8
PSO170G3167 Papaver somniferum HOM05D003638 ORTHO05D003202 3.3e-14 82.0 100 53.0
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 4.3e-14 81.6 100 54.0
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 4.3e-14 81.6 100 54.0
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 4.3e-14 81.6 100 54.0
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 7.4e-14 80.9 106 51.9
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 9.7e-14 80.5 100 54.0
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 9.7e-14 80.5 100 54.0
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 1.3e-13 80.1 110 50.0
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 1.3e-13 80.1 101 51.5
ECA236G1572 Erigeron canadensis HOM05D003638 ORTHO05D003202 2.2e-13 79.3 103 52.4
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 2.2e-13 79.3 108 50.0
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 2.8e-13 79.0 104 49.0
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 3.7e-13 78.6 101 54.5
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 4.8e-13 78.2 101 50.5
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 6.3e-13 77.8 103 47.6
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 8.2e-13 77.4 102 51.0
Gohir.D08G106900 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.1e-12 77.0 104 47.1
Gorai.004G114100 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.1e-12 77.0 104 47.1
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.1e-12 77.0 104 51.9
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.8e-12 76.3 101 52.5
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 4.1e-12 75.1 105 46.7
TPR.G15775 Trifolium pratense HOM05D003638 ORTHO05D003202 9.1e-12 73.9 103 50.5
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 2.6e-11 72.4 85 49.4
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 3.4e-11 72.0 114 43.0
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 3.4e-11 72.0 110 41.8
HanXRQChr10g0315321 Helianthus annuus HOM05D003638 ORTHO05D003202 4.5e-11 71.6 93 50.5
Psat4g033360 Pisum sativum HOM05D003638 ORTHO05D003202 4.5e-11 71.6 93 51.6
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 1.7e-10 69.7 113 44.2
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 2.2e-10 69.3 114 43.9
arahy.Tifrunner.gnm1.ann1.S7JRIG Arachis hypogaea HOM05D003638 ORTHO05D003202 2.9e-10 68.9 114 43.0
BcaC01g03061 Brassica carinata HOM05D003638 ORTHO05D003202 3.8e-10 68.6 91 50.5
C03p56510 Brassica napus HOM05D003638 ORTHO05D003202 3.8e-10 68.6 91 50.5
BolC3t17937H Brassica oleracea HOM05D003638 ORTHO05D003202 3.8e-10 68.6 91 50.5
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 5.0e-10 68.2 103 48.5
VMungo1215G0714 Vigna mungo HOM05D003638 ORTHO05D003202 5.0e-10 68.2 107 43.9
Zm00001eb374880 Zea mays HOM05D003638 ORTHO05D003202 8.5e-10 67.4 108 46.3
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 2.5e-09 65.9 96 49.0
Psat4g033320 Pisum sativum HOM05D003638 ORTHO05D003202 3.2e-09 65.5 101 44.6
MSTRG.6091 Avicennia marina HOM05D003638 ORTHO05D003202 1.2e-08 63.5 112 44.6
ECA234G1438 Erigeron canadensis HOM05D003638 ORTHO05D003202 1.0e-07 60.5 108 45.4
SHI03245 Sapria himalayana HOM05D003638 ORTHO05D003202 1.8e-07 59.7 58 56.9
Hund21608 Selenicereus undatus HOM05D000082 ORTHO05D003202 4.4e-06 55.1 99 43.4


User provided reference genes

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