Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012883001 Vitis vinifera HOM05D000054 ORTHO05D015321 1.0e-63 246.5 122 100.0
GSVIVG01014134001 Vitis vinifera HOM05D000054 ORTHO05D000171 8.1e-16 87.4 77 64.9
Lj1A826T68 Lonicera japonica HOM05D000054 ORTHO05D000171 3.4e-14 82.0 59 74.6
Actinidia12597 Actinidia chinensis HOM05D000054 ORTHO05D000171 1.7e-13 79.7 67 62.7
Phvul.011G167800 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 2.2e-13 79.3 85 56.5
Cc05_g10840 Coffea canephora HOM05D000054 ORTHO05D000171 2.9e-13 79.0 75 58.7
Haze_09272 Corylus avellana HOM05D000054 ORTHO05D000171 3.8e-13 78.6 97 53.6
Haze_13412 Corylus avellana HOM05D000054 ORTHO05D000171 6.4e-13 77.8 97 53.6
Dinv13369 Davidia involucrata HOM05D000054 ORTHO05D000171 6.4e-13 77.8 61 68.9
Potri.003G025632 Populus trichocarpa HOM05D000054 ORTHO05D000171 6.4e-13 77.8 95 50.5
Potri.003G026325 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.4e-13 77.4 68 61.8
PGR083G0379 Punica granatum HOM05D000054 ORTHO05D000171 8.4e-13 77.4 68 58.8
RcHm_v2.0_Chr5g0029911 Rosa chinensis HOM05D000054 ORTHO05D000171 8.4e-13 77.4 68 60.3
CiPaw.12G111500 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.1e-12 77.0 68 63.2
MELO3C025664.2 Cucumis melo HOM05D000054 ORTHO05D000171 1.1e-12 77.0 61 67.2
CsaV3_4G032890 Cucumis sativus L. HOM05D000054 ORTHO05D000171 1.1e-12 77.0 68 60.3
Potri.001G385600 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.4e-12 76.6 68 61.8
TAR626G1348 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.4e-12 76.6 68 57.4
CiPaw.11G158000 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.9e-12 76.3 77 55.8
Hma1.2p1_0050F.1_g028940 Hydrangea macrophylla HOM05D000054 ORTHO05D000171 1.9e-12 76.3 68 58.8
CiPaw.11G157800 Carya illinoinensis HOM05D000054 ORTHO05D000171 2.4e-12 75.9 77 57.1
Glyma.12G155900 Glycine max HOM05D000054 ORTHO05D000171 2.4e-12 75.9 57 71.9
Nitab4.5_0003166g0030 Nicotiana tabacum HOM05D000054 ORTHO05D000171 2.4e-12 75.9 68 57.4
Sabra16G0254200 Salix brachista HOM05D000054 ORTHO05D000171 2.4e-12 75.9 68 60.3
GSVIVG01014147001 Vitis vinifera HOM05D000054 ORTHO05D000171 2.4e-12 75.9 82 57.3
Nn3g21041 Nelumbo nucifera HOM05D000054 ORTHO05D000171 3.2e-12 75.5 77 53.2
PGR083G0101 Punica granatum HOM05D000054 ORTHO05D000171 3.2e-12 75.5 68 57.4
Rhsim06G0211100 Rhododendron simsii HOM05D000054 ORTHO05D000171 3.2e-12 75.5 75 56.0
vmacro09404 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 3.2e-12 75.5 77 51.9
VMungo1127G2210 Vigna mungo HOM05D000054 ORTHO05D000171 3.2e-12 75.5 85 54.1
GSVIVG01014150001 Vitis vinifera HOM05D000054 ORTHO05D000171 3.2e-12 75.5 64 68.8
Potri.001G385400 Populus trichocarpa HOM05D000054 ORTHO05D000171 4.2e-12 75.1 68 60.3
Potri.003G025800 Populus trichocarpa HOM05D000054 ORTHO05D000171 4.2e-12 75.1 68 60.3
SalBow8G2370 Salvia bowleyana HOM05D000054 ORTHO05D000171 4.2e-12 75.1 68 60.3
Thecc.07G129100 Theobroma cacao HOM05D000054 ORTHO05D000171 4.2e-12 75.1 66 63.6
FAN11G3500 Fragaria x ananassa HOM05D000054 ORTHO05D000171 5.4e-12 74.7 94 47.9
Glyma.06G226700 Glycine max HOM05D000054 ORTHO05D000171 5.4e-12 74.7 57 70.2
Manes.03G091900 Manihot esculenta HOM05D000054 ORTHO05D000171 5.4e-12 74.7 68 60.3
Nn6g34393 Nelumbo nucifera HOM05D000054 ORTHO05D005077 5.4e-12 74.7 77 50.6
Nn6g34449 Nelumbo nucifera HOM05D000054 ORTHO05D000171 5.4e-12 74.7 77 50.6
RcHm_v2.0_Chr5g0029981 Rosa chinensis HOM05D000054 ORTHO05D000171 5.4e-12 74.7 68 58.8
vmacro09410 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 5.4e-12 74.7 68 55.9
ClCG07G010050 Citrullus lanatus HOM05D000054 ORTHO05D000171 7.1e-12 74.3 68 58.8
MELO3C016108.2 Cucumis melo HOM05D000054 ORTHO05D000171 7.1e-12 74.3 68 58.8
CsaV3_4G008280 Cucumis sativus L. HOM05D000054 ORTHO05D000171 7.1e-12 74.3 68 58.8
FvH4_3g17940 Fragaria vesca HOM05D000054 ORTHO05D000171 7.1e-12 74.3 94 47.9
Potri.001G385900 Populus trichocarpa HOM05D000054 ORTHO05D000171 7.1e-12 74.3 68 60.3
GSVIVG01014145001 Vitis vinifera HOM05D000054 ORTHO05D000171 7.1e-12 74.3 89 53.9
CiPaw.11G158100 Carya illinoinensis HOM05D000054 ORTHO05D000171 9.3e-12 73.9 68 60.3
FAN16G1129 Fragaria x ananassa HOM05D000054 ORTHO05D000171 9.3e-12 73.9 94 47.9
Nitab4.5_0000035g0400 Nicotiana tabacum HOM05D000054 ORTHO05D000171 9.3e-12 73.9 68 55.9
GSVIVG01014140001 Vitis vinifera HOM05D000054 ORTHO05D000171 9.3e-12 73.9 89 53.9
FAN21G0678 Fragaria x ananassa HOM05D000054 ORTHO05D000171 1.2e-11 73.6 94 46.8
QL10p027809 Quercus lobata HOM05D000054 ORTHO05D000171 1.2e-11 73.6 68 60.3
EL10Ac4g08404 Beta vulgaris HOM05D000054 ORTHO05D000171 1.6e-11 73.2 79 50.6
CSS0033063 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.6e-11 73.2 61 62.3
CiPaw.11G157900 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.6e-11 73.2 77 54.5
QL02p081039 Quercus lobata HOM05D000054 ORTHO05D000171 1.6e-11 73.2 68 60.3
Dinv15014 Davidia involucrata HOM05D000054 ORTHO05D000171 2.1e-11 72.8 88 51.1
Duzib213G0607 Durio zibethinus HOM05D000054 ORTHO05D000171 2.1e-11 72.8 68 58.8
Rhsim04G0035500 Rhododendron simsii HOM05D000054 ORTHO05D000171 2.1e-11 72.8 89 47.2
GSVIVG01014149001 Vitis vinifera HOM05D000054 ORTHO05D000171 2.1e-11 72.8 89 53.9
Ciclev10018721m.g Citrus clementina HOM05D000054 ORTHO05D000171 2.7e-11 72.4 68 57.4
Sed0015607 Sechium edule HOM05D000054 ORTHO05D000171 2.7e-11 72.4 99 47.5
GSVIVG01014138001 Vitis vinifera HOM05D000054 ORTHO05D000171 2.7e-11 72.4 95 50.5
AUR62039598 Chenopodium quinoa HOM05D000054 ORTHO05D000171 3.5e-11 72.0 82 50.0
Hund10455 Selenicereus undatus HOM05D000054 ORTHO05D000171 3.5e-11 72.0 72 55.6
CiPaw.11G157700 Carya illinoinensis HOM05D000054 ORTHO05D000171 4.6e-11 71.6 77 54.5
AUR62019625 Chenopodium quinoa HOM05D000054 ORTHO05D000171 4.6e-11 71.6 82 48.8
vmacro11963 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 4.6e-11 71.6 96 45.8
arahy.Tifrunner.gnm1.ann1.R7UPJF Arachis hypogaea HOM05D000054 ORTHO05D000171 6.0e-11 71.2 89 50.6
CANSAT56G1606 Cannabis sativa HOM05D000054 ORTHO05D000171 6.0e-11 71.2 60 63.3
Peaxi162Scf00000g00708 Petunia axillaris HOM05D000054 ORTHO05D000171 6.0e-11 71.2 90 46.7
QL08p025818 Quercus lobata HOM05D000054 ORTHO05D000171 6.0e-11 71.2 68 58.8
QL10p027704 Quercus lobata HOM05D000054 ORTHO05D000171 6.0e-11 71.2 68 58.8
Sabra11G0094800 Salix brachista HOM05D000054 ORTHO05D000283 6.0e-11 71.2 68 54.4
Sed0016500 Sechium edule HOM05D000054 ORTHO05D000171 6.0e-11 71.2 68 55.9
Solyc12g014350.3 Solanum lycopersicum HOM05D000054 ORTHO05D000171 6.0e-11 71.2 57 63.2
Sopen12g006120 Solanum pennellii HOM05D000054 ORTHO05D000171 6.0e-11 71.2 57 63.2
PGSC0003DMG400015391 Solanum tuberosum HOM05D000054 ORTHO05D000171 6.0e-11 71.2 66 54.5
Glyma.13G266300 Glycine max HOM05D000054 ORTHO05D000171 7.9e-11 70.9 85 52.9
MD11G1267500 Malus domestica HOM05D000054 ORTHO05D000171 7.9e-11 70.9 94 48.9
Prupe.4G158000 Prunus persica HOM05D000054 ORTHO05D000171 7.9e-11 70.9 94 47.9
Potri.011G106400 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.0e-10 70.5 68 54.4
vmacro09409 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 1.0e-10 70.5 68 52.9
Nn3g21042 Nelumbo nucifera HOM05D000054 ORTHO05D000171 1.3e-10 70.1 68 57.4
Rhsim04G0036300 Rhododendron simsii HOM05D000054 ORTHO05D000171 1.3e-10 70.1 85 48.2
TAR624G0357 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.3e-10 70.1 67 53.7
CAN.G292.12 Capsicum annuum HOM05D000054 ORTHO05D000171 2.3e-10 69.3 68 51.5
Dinv15010 Davidia involucrata HOM05D000054 ORTHO05D005077 2.3e-10 69.3 78 51.3
Migut.M00701 Erythranthe guttata HOM05D000054 ORTHO05D000171 2.3e-10 69.3 68 58.8
Gohir.A01G048900 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.3e-10 69.3 68 54.4
SGA_v2.0_scaffold73G24392 Striga asiatica HOM05D000054 ORTHO05D000171 2.3e-10 69.3 60 63.3
arahy.Tifrunner.gnm1.ann1.SPKK1S Arachis hypogaea HOM05D000054 ORTHO05D000171 3.0e-10 68.9 89 49.4
COL.COLO4_17487 Corchorus olitorius HOM05D000054 ORTHO05D000171 3.0e-10 68.9 57 64.9
Gohir.D05G338700 Gossypium hirsutum HOM05D000054 ORTHO05D000171 3.0e-10 68.9 68 54.4
Gorai.009G363600 Gossypium raimondii HOM05D000054 ORTHO05D000171 3.0e-10 68.9 68 54.4
Gohir.D01G039500 Gossypium hirsutum HOM05D000054 ORTHO05D000171 3.9e-10 68.6 68 55.9
Gorai.002G049000 Gossypium raimondii HOM05D000054 ORTHO05D000171 3.9e-10 68.6 68 55.9
Potri.001G386300 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.9e-10 68.6 68 57.4
TAR624G0629 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.9e-10 68.6 82 48.8
Eucgr.F01305 Eucalyptus grandis HOM05D000054 ORTHO05D000171 5.1e-10 68.2 68 52.9
TAR624G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.1e-10 68.2 68 51.5
ECA236G0246 Erigeron canadensis HOM05D000054 ORTHO05D000171 6.7e-10 67.8 66 56.1
Oeu058463.2 Olea europaea HOM05D000054 ORTHO05D000171 6.7e-10 67.8 71 53.5
Eucgr.L02548 Eucalyptus grandis HOM05D000054 ORTHO05D000171 8.7e-10 67.4 68 52.9
Gohir.A04G044400 Gossypium hirsutum HOM05D000054 ORTHO05D000171 8.7e-10 67.4 68 52.9
HanXRQChr10g0305541 Helianthus annuus HOM05D000054 ORTHO05D000171 8.7e-10 67.4 68 51.5
AUR62019624 Chenopodium quinoa HOM05D000054 ORTHO05D000171 1.1e-09 67.0 82 47.6
Eucgr.F04177 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.1e-09 67.0 69 52.2
Potri.001G385300 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.1e-09 67.0 93 48.4
Eucgr.F04179 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.5e-09 66.6 74 50.0
Glyma.12G231800 Glycine max HOM05D000054 ORTHO05D000171 1.5e-09 66.6 85 50.6
Glyma.12G233000 Glycine max HOM05D000054 ORTHO05D000171 1.5e-09 66.6 85 50.6
Aqoxy4G00212 Aquilegia oxysepala HOM05D000054 ORTHO05D000171 1.9e-09 66.2 66 54.5
Ca_03938_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000171 1.9e-09 66.2 57 64.9
Atru.chr2.2019 Acer truncatum HOM05D000054 ORTHO05D000171 2.5e-09 65.9 60 66.7
Atru.chr2.2026 Acer truncatum HOM05D000054 ORTHO05D005077 2.5e-09 65.9 68 57.4
Ah.04g164070 Amaranthus hybridus HOM05D000054 ORTHO05D000171 2.5e-09 65.9 77 46.8
ECA234G0716 Erigeron canadensis HOM05D000054 ORTHO05D000171 2.5e-09 65.9 68 51.5
Eucgr.F01302 Eucalyptus grandis HOM05D000054 ORTHO05D000171 3.3e-09 65.5 68 52.9
Eucgr.F01306 Eucalyptus grandis HOM05D000054 ORTHO05D000171 4.3e-09 65.1 68 52.9
Lj3g0004211 Lotus japonicus HOM05D000054 ORTHO05D000171 4.3e-09 65.1 95 45.3
TWI39G1181 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 5.6e-09 64.7 57 68.4
Eucgr.F01301 Eucalyptus grandis HOM05D000054 ORTHO05D000171 7.4e-09 64.3 64 53.1
MBI06_g10741_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 7.4e-09 64.3 74 47.3
SalBow8G1032 Salvia bowleyana HOM05D000054 ORTHO05D000171 9.6e-09 63.9 66 56.1
PGSC0003DMG400013199 Solanum tuberosum HOM05D000054 ORTHO05D000171 9.6e-09 63.9 69 52.2
PGSC0003DMG400028617 Solanum tuberosum HOM05D000054 ORTHO05D000171 9.6e-09 63.9 68 48.5
Nn3g21040 Nelumbo nucifera HOM05D000054 ORTHO05D000171 1.3e-08 63.5 75 50.7
Oeu010024.1 Olea europaea HOM05D000054 ORTHO05D015321 1.3e-08 63.5 57 61.4
AL1G61940 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 1.6e-08 63.2 70 55.7
MBI19_g13325_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D015321 1.6e-08 63.2 63 54.0
Medtr2g075250 Medicago truncatula HOM05D000054 ORTHO05D000171 1.6e-08 63.2 71 52.1
AT1G53440 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 2.1e-08 62.8 70 55.7
Lsat_1_v5_gn_7_102080 Lactuca sativa HOM05D000054 ORTHO05D000171 2.1e-08 62.8 66 50.0
THA.LOC104822575 Tarenaya hassleriana HOM05D000054 ORTHO05D000171 2.8e-08 62.4 67 55.2
ATR0077G001 Amborella trichopoda HOM05D000054 ORTHO05D005077 3.7e-08 62.0 68 48.5
Nn3g21046 Nelumbo nucifera HOM05D000054 ORTHO05D000171 3.7e-08 62.0 68 50.0
PSO170G1676 Papaver somniferum HOM05D000054 ORTHO05D000171 3.7e-08 62.0 68 51.5
PSO528G0130 Papaver somniferum HOM05D000054 ORTHO05D000171 3.7e-08 62.0 68 51.5
ATR0213G012 Amborella trichopoda HOM05D000054 ORTHO05D000171 4.8e-08 61.6 68 50.0
Eucgr.B00978 Eucalyptus grandis HOM05D000054 ORTHO05D000171 4.8e-08 61.6 66 51.5
AL1G61950 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 6.2e-08 61.2 70 54.3
Carub.0001s4261 Capsella rubella HOM05D000054 ORTHO05D000171 6.2e-08 61.2 70 54.3
Eucgr.B00963 Eucalyptus grandis HOM05D000054 ORTHO05D000171 6.2e-08 61.2 66 51.5
Eucgr.B00972 Eucalyptus grandis HOM05D000054 ORTHO05D000171 6.2e-08 61.2 66 51.5
TWI38G2264 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 6.2e-08 61.2 57 64.9
BcaB02g10919 Brassica carinata HOM05D000054 ORTHO05D000171 1.1e-07 60.5 60 60.0
BcaC08g44092 Brassica carinata HOM05D000054 ORTHO05D000171 1.1e-07 60.5 60 60.0
VMungo1080G0262 Vigna mungo HOM05D000054 ORTHO05D000171 1.1e-07 60.5 86 51.2
AT1G53430 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 1.8e-07 59.7 89 48.3
ClCG11G017250 Citrullus lanatus HOM05D000054 ORTHO05D000171 1.8e-07 59.7 56 57.1
HanXRQChr13g0412091 Helianthus annuus HOM05D000054 ORTHO05D000171 1.8e-07 59.7 67 52.2
ATR0452G001 Amborella trichopoda HOM05D000054 ORTHO05D005077 2.4e-07 59.3 68 47.1
CARHR043660 Cardamine hirsuta HOM05D000054 ORTHO05D000171 2.4e-07 59.3 79 50.6
Sp1g39980 Schrenkiella parvula HOM05D000054 ORTHO05D000171 2.4e-07 59.3 60 61.7
TPR.G13171 Trifolium pratense HOM05D000054 ORTHO05D000171 2.4e-07 59.3 68 51.5
GSVIVG01012885001 Vitis vinifera HOM05D000054 ORTHO05D015321 2.4e-07 59.3 45 71.1
Nn3g21045 Nelumbo nucifera HOM05D000054 ORTHO05D000171 3.1e-07 58.9 68 45.6
Nn6g34454 Nelumbo nucifera HOM05D000054 ORTHO05D000171 3.1e-07 58.9 72 45.8
CSS0015135 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 4.0e-07 58.5 86 44.2
Lsat_1_v5_gn_5_125941 Lactuca sativa HOM05D000054 ORTHO05D000171 4.0e-07 58.5 66 47.0
Phvul.005G079100 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 4.0e-07 58.5 86 48.8
Sed0015874 Sechium edule HOM05D000054 ORTHO05D000171 4.0e-07 58.5 66 50.0
A05p18250 Brassica napus HOM05D000054 ORTHO05D000171 5.3e-07 58.2 60 58.3
C06p14940 Brassica napus HOM05D000054 ORTHO05D000171 5.3e-07 58.2 60 58.3
BolC6t36671H Brassica oleracea HOM05D000054 ORTHO05D000171 5.3e-07 58.2 60 58.3
BraA05t20720Z Brassica rapa HOM05D000054 ORTHO05D000171 5.3e-07 58.2 60 58.3
Thhalv10011204m.g Eutrema salsugineum HOM05D000054 ORTHO05D000171 5.3e-07 58.2 60 60.0
HanXRQChr15g0495111 Helianthus annuus HOM05D000054 ORTHO05D000171 5.3e-07 58.2 84 45.2
Lsat_1_v5_gn_7_102060 Lactuca sativa HOM05D000054 ORTHO05D000171 9.0e-07 57.4 66 48.5
Psat0s1728g0240 Pisum sativum HOM05D000054 ORTHO05D000171 9.0e-07 57.4 57 59.6
Nn6g34455 Nelumbo nucifera HOM05D000054 ORTHO05D000171 1.2e-06 57.0 66 48.5
Sabra16G0253800 Salix brachista HOM05D000054 ORTHO05D000171 1.5e-06 56.6 77 45.5
CDE10G0194 Ceratophyllum demersum HOM05D000054 ORTHO05D000171 2.0e-06 56.2 68 47.1
MBI06_g16565_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 2.0e-06 56.2 74 40.5
Eucgr.B00894 Eucalyptus grandis HOM05D000054 ORTHO05D000171 2.6e-06 55.8 66 48.5
HanXRQChr14g0439921 Helianthus annuus HOM05D000054 ORTHO05D000171 2.6e-06 55.8 67 47.8
Sc07g0002500 Simmondsia chinensis HOM05D000054 ORTHO05D000171 4.5e-06 55.1 69 43.5
EL10Ac4g08400 Beta vulgaris HOM05D000054 ORTHO05D000171 5.8e-06 54.7 96 38.5
Lalb_Chr25g0285671 Lupinus albus HOM05D000054 ORTHO05D000171 5.8e-06 54.7 80 43.8
Hma1.2p1_0325F.1_g125780 Hydrangea macrophylla HOM05D000054 ORTHO05D015321 7.6e-06 54.3 68 52.9
Hma1.2p1_2701F.1_g327065 Hydrangea macrophylla HOM05D000054 ORTHO05D015321 7.6e-06 54.3 68 52.9
HanXRQChr13g0412141 Helianthus annuus HOM05D000054 ORTHO05D000171 1.0e-05 53.9 67 49.3


User provided reference genes

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