Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.9e-301 1038.5 553 100.0
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.1e-213 746.9 554 71.7
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 6.8e-211 737.6 560 71.6
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 1.9e-205 719.5 557 70.9
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.5e-205 719.2 565 69.2
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 9.5e-205 717.2 544 70.4
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.1e-203 712.2 567 68.6
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 3.1e-203 712.2 560 68.9
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 4.0e-203 711.8 562 70.5
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.2e-202 710.3 553 69.6
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.2e-202 710.3 550 69.8
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 9.8e-202 707.2 554 69.0
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 2.0e-199 699.5 558 68.3
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 7.8e-199 697.6 560 68.2
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.0e-198 697.2 552 68.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.0e-198 697.2 566 68.0
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 2.3e-198 696.0 563 67.0
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 9.5e-197 690.6 565 66.7
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 9.5e-197 690.6 567 67.7
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.4e-195 686.8 560 66.6
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 6.8e-195 684.5 554 67.5
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.2e-194 683.7 551 66.8
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.0e-194 682.9 560 65.9
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.3e-193 680.2 547 66.7
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.9e-193 679.1 555 67.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 4.1e-192 675.2 553 67.6
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 5.4e-192 674.9 662 58.8
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 7.1e-192 674.5 558 65.6
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.2e-191 673.7 558 66.5
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.6e-191 673.3 557 66.4
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 2.7e-191 672.5 566 64.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.7e-191 672.5 552 67.0
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.0e-190 670.6 553 67.1
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.3e-190 670.2 553 64.6
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.7e-190 669.8 567 64.4
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 1.7e-190 669.8 566 65.4
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-190 669.5 557 65.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.3e-190 669.5 566 65.4
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 3.0e-190 669.1 552 66.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.1e-189 667.2 566 65.0
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.5e-189 666.8 569 64.9
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-188 661.8 570 64.9
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 8.1e-188 661.0 570 63.2
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.1e-188 661.0 573 64.0
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 4.0e-187 658.7 546 65.0
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.8e-187 657.9 573 64.2
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.2e-186 657.1 570 62.3
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.5e-186 656.8 552 65.8
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.0e-186 656.4 557 65.0
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.0e-186 656.4 571 62.7
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 9.9e-186 654.1 568 64.4
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.3e-185 653.7 553 63.8
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 3.7e-185 652.1 556 63.8
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 6.4e-185 651.4 547 65.3
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.4e-184 650.2 561 63.5
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.9e-184 649.8 562 63.2
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.9e-184 649.8 568 63.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.9e-184 649.8 550 64.4
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.1e-184 648.7 573 63.4
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 4.1e-184 648.7 567 63.8
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.2e-183 647.1 559 63.9
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.1e-183 646.4 561 63.1
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.5e-181 639.4 556 63.1
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 7.3e-181 637.9 560 62.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.6e-180 636.7 576 62.2
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.1e-180 636.3 549 63.0
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 8.1e-180 634.4 542 64.4
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 3.1e-179 632.5 550 62.7
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 3.4e-178 629.0 562 62.3
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 7.6e-178 627.9 554 63.9
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 3.2e-176 622.5 561 62.4
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 7.1e-176 621.3 545 61.5
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.5e-175 619.0 544 61.6
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.0e-174 617.5 563 61.1
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.3e-174 616.3 578 60.7
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 3.4e-170 602.4 543 60.0
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.9e-170 600.9 555 59.5
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.4e-169 598.2 563 59.9
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.1e-168 597.4 579 57.7
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.9e-168 596.7 582 57.4
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.4e-168 596.3 563 59.9
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.9e-165 586.6 555 60.4
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 6.2e-164 581.6 561 57.0
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 4.0e-163 578.9 562 58.2
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.0e-162 576.6 556 56.7
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.9e-161 572.8 564 58.0
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.2e-159 567.4 576 53.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.6e-159 567.0 416 74.3
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 2.1e-159 566.6 577 53.2
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 3.0e-158 562.8 570 53.9
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.4e-155 553.1 575 52.5
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 7.6e-154 548.1 573 53.1
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.7e-153 547.0 580 51.4
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.2e-153 546.6 569 52.9
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 2.2e-153 546.6 573 52.9
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 6.5e-153 545.0 574 52.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 6.5e-153 545.0 565 52.7
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.1e-151 540.0 576 51.2
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.5e-146 523.9 569 50.6
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.5e-146 523.9 541 54.9
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.2e-145 520.0 456 62.3
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.2e-145 520.0 579 52.8
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.2e-144 516.2 428 65.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.0e-138 496.9 553 54.4
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 3.9e-134 482.6 549 50.5
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.8e-132 476.5 499 56.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.8e-131 473.8 432 60.9
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.6e-130 469.9 557 49.7
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.1e-127 460.3 372 68.0
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.1e-123 446.4 529 51.2
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 3.1e-123 446.4 569 47.6
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.1e-123 446.0 309 73.8
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 7.7e-114 415.2 546 44.3
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.3e-113 414.5 551 44.5
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.3e-110 403.7 281 73.0
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 4.4e-109 399.4 554 44.4
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.9e-104 384.0 547 41.7
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 6.6e-97 359.0 398 49.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 4.9e-92 342.8 467 47.3
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.4e-91 340.5 501 43.7
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 4.0e-86 323.2 587 40.0
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.3e-84 318.2 336 56.0
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 4.7e-79 299.7 308 54.9
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-68 265.0 225 63.6
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-65 254.2 489 39.7
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.3e-64 249.2 224 62.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.6e-63 246.9 172 72.7
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 8.1e-63 245.7 158 76.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 5.2e-62 243.0 408 37.0
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.4e-48 196.1 149 70.5
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-44 184.1 356 38.5
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 4.9e-44 183.3 139 69.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-43 181.8 141 66.0
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-38 165.6 121 68.6
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 9.0e-38 162.5 145 55.2
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-37 162.2 121 66.9
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-28 130.2 286 38.8
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-25 122.5 86 73.3
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 2.8e-23 114.4 504 26.8
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-23 113.6 175 40.0
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 4.8e-23 113.6 90 67.8
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.9e-20 104.4 102 54.9
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.0e-16 91.7 56 75.0
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.4e-14 85.5 67 65.7
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 4.1e-14 84.0 164 43.3
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-11 75.9 48 79.2
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-11 74.7 42 83.3
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-10 72.0 169 37.3
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-09 68.9 164 39.0
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 3.0e-09 67.8 52 67.3
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 7.4e-08 63.2 189 32.8
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-07 61.2 39 71.8
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 2.8e-07 61.2 44 65.9
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.3e-07 60.1 46 65.2
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-06 58.5 36 75.0
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 2.4e-06 58.2 51 56.9
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-06 57.8 159 34.0
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 7.0e-06 56.6 43 65.1


User provided reference genes

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