Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 6.3e-274 947.6 809 100.0
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 8.9e-135 485.3 980 60.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 1.2e-128 464.9 979 62.2
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 2.8e-128 463.8 980 62.3
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 6.4e-125 452.6 976 61.2
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 2.1e-120 437.6 973 59.8
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 2.1e-115 421.0 980 60.3
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 6.6e-114 416.0 971 59.5
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 6.6e-114 416.0 971 59.5
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 8.6e-114 415.6 978 59.5
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 9.5e-113 412.1 977 60.4
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.4e-111 408.3 977 60.2
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 4.2e-108 396.7 807 63.9
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.3e-106 391.0 919 60.9
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 5.1e-106 389.8 963 59.1
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 3.3e-105 387.1 969 58.8
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.6e-104 384.8 871 63.7
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.1e-104 384.4 964 58.5
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.2e-101 374.4 977 56.6
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 5.4e-100 369.8 976 57.4
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 9.3e-100 369.0 897 60.9
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 9.3e-100 369.0 984 55.8
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 1.0e-98 365.5 980 45.3
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.3e-98 365.2 888 61.6
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 5.6e-97 359.8 965 57.6
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.3e-96 358.6 983 54.4
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.1e-95 355.5 978 56.7
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.2e-94 352.1 971 57.1
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 2.0e-94 351.3 948 54.3
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 5.8e-94 349.7 868 61.5
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 9.9e-94 349.0 976 52.9
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 9.9e-94 349.0 977 57.0
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 9.9e-94 349.0 669 51.4
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.3e-93 348.6 976 52.7
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.4e-92 345.1 979 53.9
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.4e-92 345.1 425 70.6
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 2.4e-92 344.4 866 61.3
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.7e-91 340.9 866 61.3
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 2.7e-91 340.9 970 55.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.0e-90 337.4 426 73.2
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 1.5e-89 335.1 972 55.8
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 3.3e-89 334.0 977 56.5
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 3.7e-88 330.5 870 61.0
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.4e-87 328.6 859 60.5
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 2.4e-87 327.8 425 69.6
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 1.2e-86 325.5 941 47.0
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 2.0e-86 324.7 860 61.4
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.0e-85 322.4 984 47.9
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 1.4e-84 318.5 976 54.5
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 3.2e-84 317.4 934 56.6
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 3.2e-84 317.4 424 68.6
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 5.7e-81 306.6 976 54.1
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.6e-80 305.1 898 54.7
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 2.8e-80 304.3 871 58.6
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 2.4e-79 301.2 972 52.7
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 5.3e-79 300.1 810 62.2
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.8e-78 296.6 668 48.1
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 4.9e-77 293.5 886 59.0
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 1.4e-76 292.0 394 72.6
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 3.2e-76 290.8 984 54.0
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 1.2e-75 288.9 889 58.8
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 1.2e-75 288.9 889 58.8
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 3.5e-75 287.3 827 53.6
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 5.1e-74 283.5 966 53.6
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.1e-73 282.3 891 58.2
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.5e-73 281.2 992 52.5
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.3e-72 278.9 872 59.3
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.9e-69 267.7 877 58.2
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 3.8e-69 267.3 903 54.6
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 4.2e-68 263.8 529 57.8
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 9.4e-68 262.7 966 53.0
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 2.3e-66 258.1 799 61.8
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 2.3e-66 258.1 653 53.0
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 5.1e-66 256.9 954 52.7
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 4.3e-65 253.8 838 47.3
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 4.8e-64 250.4 976 51.7
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.2e-59 235.7 949 53.3
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 5.1e-58 230.3 405 62.7
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 7.4e-57 226.5 915 51.7
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 9.7e-57 226.1 645 52.9
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.6e-54 218.0 351 55.3
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 2.5e-52 211.5 949 53.0
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 9.4e-52 209.5 893 53.8
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 8.0e-51 206.5 945 52.8
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 7.4e-49 199.9 530 49.4
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 7.2e-36 156.8 298 71.1
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.6e-33 148.3 127 59.8
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 4.2e-28 131.0 651 46.5
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 7.2e-28 130.2 663 46.2
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 2.1e-27 128.6 362 60.5
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 4.0e-26 124.4 375 69.1
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 8.9e-26 123.2 368 68.8
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 9.8e-25 119.8 377 67.9
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.9e-24 118.2 375 68.0
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 6.3e-24 117.1 222 32.4
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.1e-23 116.3 132 50.0
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 2.3e-21 108.6 148 43.9
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 9.5e-20 103.2 382 53.1
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.1e-18 98.2 114 47.4
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 3.1e-18 98.2 151 40.4
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 5.2e-18 97.4 154 35.1
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 7.0e-15 87.0 177 32.8
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 6.0e-14 84.0 132 39.4
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-13 82.8 146 33.6
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.1e-12 79.7 95 43.2
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 4.0e-10 71.2 95 41.1
AagrBONN_evm.TU.Sc2ySwM_362.2110 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-09 67.8 209 24.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 5.8e-09 67.4 233 24.0
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 2.9e-08 65.1 177 27.7
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 2.9e-08 65.1 235 24.3
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 4.9e-08 64.3 228 23.2
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 6.4e-08 63.9 44 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5321 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-07 63.2 199 24.1
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 1.9e-07 62.4 188 24.5
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 2.4e-07 62.0 209 25.8
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 4.1e-07 61.2 203 24.6
BolC9t53253H Brassica oleracea HOM05D000001 ORTHO05D000003 5.4e-07 60.8 222 23.9
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 7.1e-07 60.5 187 23.0
AagrBONN_evm.TU.Sc2ySwM_228.3013 Anthoceros agrestis HOM05D000001 ORTHO05D009083 9.2e-07 60.1 211 21.8
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 9.2e-07 60.1 105 31.4
AUR62020574 Chenopodium quinoa HOM05D008470 ORTHO05D010644 9.2e-07 60.1 96 32.3
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 9.2e-07 60.1 233 22.7
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 1.2e-06 59.7 167 24.6
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.2e-06 59.7 167 27.5
Gohir.A05G405100 Gossypium hirsutum HOM05D002825 ORTHO05D003824 1.2e-06 59.7 187 24.1
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 1.2e-06 59.7 165 25.5
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 1.6e-06 59.3 221 24.0
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 1.6e-06 59.3 221 24.0
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.6e-06 59.3 106 30.2
Gohir.D04G010500 Gossypium hirsutum HOM05D002825 ORTHO05D003824 2.1e-06 58.9 187 23.5
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 2.1e-06 58.9 187 23.5
MBI01_g12915_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D012157 2.1e-06 58.9 216 24.5
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 2.7e-06 58.5 209 24.4
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 2.7e-06 58.5 167 27.5
AagrBONN_evm.TU.Sc2ySwM_344.1460 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 58.2 212 22.6
AagrBONN_evm.TU.Sc2ySwM_344.1500 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 58.2 212 22.6
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 3.5e-06 58.2 176 29.5
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 3.5e-06 58.2 107 29.0
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 3.5e-06 58.2 122 31.1
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 3.5e-06 58.2 202 22.3
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 3.5e-06 58.2 202 22.3
PGSC0003DMG400009341 Solanum tuberosum HOM05D007402 ORTHO05D003673 3.5e-06 58.2 199 22.1
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 3.5e-06 58.2 202 22.3
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 4.6e-06 57.8 167 27.5
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 4.6e-06 57.8 104 28.8
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 4.6e-06 57.8 139 29.5
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 4.6e-06 57.8 86 32.6
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 6.0e-06 57.4 105 30.5
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 6.0e-06 57.4 167 25.1
AagrBONN_evm.TU.Sc2ySwM_337.1 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.8e-06 57.0 210 22.4
AagrBONN_evm.TU.Sc2ySwM_344.4058 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.8e-06 57.0 187 22.5
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 7.8e-06 57.0 202 24.3


User provided reference genes

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