Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.2e-65 251.5 120 100.0
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.6e-16 88.6 46 89.1
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 8.8e-15 84.0 50 74.0
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 3.4e-14 82.0 46 78.3
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 4.4e-14 81.6 46 78.3
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 4.4e-14 81.6 46 78.3
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 5.7e-14 81.3 52 73.1
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 5.7e-14 81.3 46 76.1
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 7.5e-14 80.9 50 72.0
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 76.1
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 73.9
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 76.1
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 76.1
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.3e-13 80.1 50 70.0
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 1.3e-13 80.1 50 70.0
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 73.9
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 73.9
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 73.9
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.3e-13 80.1 46 73.9
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 1.3e-13 80.1 50 70.0
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.7e-13 79.7 46 73.9
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.7e-13 79.7 46 73.9
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.7e-13 79.7 48 72.9
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.7e-13 79.7 48 72.9
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.7e-13 79.7 46 73.9
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.7e-13 79.7 46 73.9
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.7e-13 79.7 46 73.9
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 1.7e-13 79.7 46 73.9
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.2e-13 79.3 50 72.0
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 2.2e-13 79.3 46 76.1
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.2e-13 79.3 46 76.1
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 2.2e-13 79.3 46 73.9
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 2.2e-13 79.3 46 71.7
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.2e-13 79.3 46 73.9
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.8e-13 79.0 46 73.9
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 2.8e-13 79.0 52 71.2
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.8e-13 79.0 46 71.7
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 2.8e-13 79.0 46 73.9
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.8e-13 79.0 46 76.1
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.8e-13 79.0 46 76.1
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 2.8e-13 79.0 46 71.7
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 3.7e-13 78.6 48 72.9
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 3.7e-13 78.6 46 73.9
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 3.7e-13 78.6 50 70.0
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 4.8e-13 78.2 43 76.7
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 4.8e-13 78.2 46 71.7
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 4.8e-13 78.2 46 71.7
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 4.8e-13 78.2 46 71.7
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 4.8e-13 78.2 46 73.9
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 6.3e-13 77.8 46 71.7
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 6.3e-13 77.8 46 71.7
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 6.3e-13 77.8 46 73.9
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 6.3e-13 77.8 46 73.9
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 8.3e-13 77.4 46 71.7
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 8.3e-13 77.4 50 68.0
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 8.3e-13 77.4 46 71.7
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.1e-12 77.0 46 73.9
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.1e-12 77.0 46 73.9
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.1e-12 77.0 46 73.9
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.4e-12 76.6 43 74.4
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 1.4e-12 76.6 46 71.7
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.8e-12 76.3 46 71.7
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 2.4e-12 75.9 46 71.7
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 2.4e-12 75.9 46 71.7
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.1e-12 75.5 43 74.4
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 3.1e-12 75.5 50 68.0
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.1e-12 75.5 46 67.4
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 4.1e-12 75.1 46 71.7
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 4.1e-12 75.1 52 67.3
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 5.4e-12 74.7 46 69.6
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 5.4e-12 74.7 52 65.4
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 7.0e-12 74.3 46 67.4
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 7.0e-12 74.3 46 69.6
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 7.0e-12 74.3 50 66.0
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 9.1e-12 73.9 46 65.2
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 9.1e-12 73.9 46 69.6
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.2e-11 73.6 46 67.4
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.2e-11 73.6 46 67.4
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 1.2e-11 73.6 46 67.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 1.2e-11 73.6 46 67.4
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.2e-11 73.6 46 69.6
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.2e-11 73.6 46 67.4
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.6e-11 73.2 42 73.8
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 3.5e-11 72.0 46 67.4
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 3.5e-11 72.0 46 67.4
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 3.5e-11 72.0 46 67.4
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 4.5e-11 71.6 59 59.3
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 5.9e-11 71.2 50 60.0
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 5.9e-11 71.2 50 62.0
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 7.7e-11 70.9 41 73.2
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.6e-10 67.8 46 63.0
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 1.9e-09 66.2 46 63.0
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 2.5e-09 65.9 46 69.6
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 4.2e-09 65.1 46 63.0
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 4.2e-09 65.1 50 64.0
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 7.2e-09 64.3 46 63.0
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 7.2e-09 64.3 46 63.0
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 7.2e-09 64.3 46 63.0
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 9.5e-09 63.9 41 65.9
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.4e-07 60.1 42 61.9
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.4e-07 60.1 42 61.9
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 1.4e-07 60.1 46 54.3
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.8e-07 59.7 46 58.7
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 7.5e-06 54.3 53 52.8
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 9.8e-06 53.9 46 56.5


User provided reference genes

Program Settings