Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 3.2e-41 171.4 90 100.0
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.1e-33 146.4 78 98.7
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 7.6e-19 97.1 82 68.3
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 9.9e-19 96.7 78 66.7
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 2.9e-18 95.1 89 62.9
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 4.9e-18 94.4 79 65.8
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 6.4e-18 94.0 55 85.5
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 6.4e-18 94.0 79 65.8
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 1.4e-17 92.8 57 80.7
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 2.4e-17 92.0 82 64.6
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 3.2e-17 91.7 53 83.0
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 3.2e-17 91.7 55 80.0
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 5.4e-17 90.9 55 80.0
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 9.2e-17 90.1 78 65.4
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 9.2e-17 90.1 53 84.9
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 9.2e-17 90.1 53 84.9
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 9.2e-17 90.1 53 84.9
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 1.2e-16 89.7 55 81.8
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 1.2e-16 89.7 53 84.9
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 1.2e-16 89.7 53 83.0
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 1.6e-16 89.4 55 80.0
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 2.1e-16 89.0 79 63.3
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 3.5e-16 88.2 87 60.9
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 3.5e-16 88.2 53 83.0
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 6.0e-16 87.4 78 64.1
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 7.8e-16 87.0 55 74.5
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 7.8e-16 87.0 53 83.0
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 1.0e-15 86.7 55 78.2
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 1.0e-15 86.7 61 75.4
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 1.0e-15 86.7 84 60.7
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 1.3e-15 86.3 81 59.3
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 1.3e-15 86.3 55 78.2
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 2.3e-15 85.5 57 75.4
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.3e-15 85.5 86 57.0
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 2.3e-15 85.5 71 66.2
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 3.0e-15 85.1 78 60.3
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 3.0e-15 85.1 84 58.3
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 3.9e-15 84.7 88 58.0
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 5.1e-15 84.3 53 77.4
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 5.1e-15 84.3 56 75.0
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 6.6e-15 84.0 50 82.0
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 6.6e-15 84.0 66 65.2
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 8.7e-15 83.6 82 58.5
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 8.7e-15 83.6 88 54.5
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 8.7e-15 83.6 88 54.5
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 8.7e-15 83.6 86 55.8
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 8.7e-15 83.6 88 56.8
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 1.5e-14 82.8 56 73.2
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 1.5e-14 82.8 53 77.4
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.9e-14 82.4 56 73.2
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 1.9e-14 82.4 87 57.5
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.5e-14 82.0 89 57.3
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.5e-14 82.0 89 57.3
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 2.5e-14 82.0 88 54.5
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 2.5e-14 82.0 82 54.9
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 3.3e-14 81.6 55 76.4
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 4.3e-14 81.3 54 77.8
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 5.6e-14 80.9 86 53.5
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 5.6e-14 80.9 87 57.5
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 9.6e-14 80.1 77 58.4
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 9.6e-14 80.1 78 59.0
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 9.6e-14 80.1 78 59.0
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.2e-13 79.7 83 59.0
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 2.1e-13 79.0 56 73.2
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 2.8e-13 78.6 56 69.6
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 4.7e-13 77.8 82 51.2
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 1.1e-12 76.6 99 48.5
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 1.4e-12 76.3 54 75.9
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 1.8e-12 75.9 71 60.6
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 3.1e-12 75.1 86 54.7
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 1.2e-11 73.2 54 70.4
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 3.4e-11 71.6 48 77.1
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 3.4e-11 71.6 62 62.9
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 6.4e-10 67.4 84 50.0
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 6.0e-08 60.8 71 45.1
CDE05G1932 Ceratophyllum demersum HOM05D002906 ORTHO05D003211 2.3e-07 58.9 49 61.2
Zm00001eb260130 Zea mays HOM05D007991 ORTHO05D010158 5.1e-07 57.8 55 54.5


User provided reference genes

Program Settings