Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012556001 Vitis vinifera HOM05D001083 ORTHO05D037767 1.2e-18 95.5 49 100.0
PGSC0003DMG400030128 Solanum tuberosum HOM05D001083 ORTHO05D037767 1.7e-12 75.1 46 80.4
PGSC0003DMG400009848 Solanum tuberosum HOM05D001083 ORTHO05D037767 2.9e-12 74.3 46 80.4
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 4.1e-11 70.5 46 78.3
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 1.0e-09 65.9 59 62.7
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 1.7e-09 65.1 69 58.0
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 2.3e-09 64.7 69 56.5
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 3.0e-09 64.3 69 55.1
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 3.0e-09 64.3 69 56.5
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 56.5
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 56.5
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 5.0e-09 63.5 69 55.1
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 56.5
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 55.1
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 5.0e-09 63.5 69 56.5
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 6.6e-09 63.2 69 55.1
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 6.6e-09 63.2 69 55.1
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 8.6e-09 62.8 69 53.6
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.1e-08 62.4 69 55.1
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 1.1e-08 62.4 69 53.6
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 1.1e-08 62.4 69 53.6
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 1.1e-08 62.4 69 55.1
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 1.1e-08 62.4 71 53.5
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 1.1e-08 62.4 69 55.1
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 1.1e-08 62.4 69 55.1
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.1e-08 62.4 69 53.6
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 1.9e-08 61.6 69 55.1
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 1.9e-08 61.6 69 55.1
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 1.9e-08 61.6 69 55.1
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 1.9e-08 61.6 69 53.6
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 2.5e-08 61.2 69 55.1
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 3.3e-08 60.8 69 53.6
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 3.3e-08 60.8 69 52.2
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 3.3e-08 60.8 69 52.2
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 52.2
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 55.1
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 52.2
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 53.6
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 52.2
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 52.2
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 4.3e-08 60.5 69 53.6
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 5.6e-08 60.1 69 53.6
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 5.6e-08 60.1 69 50.7
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 5.6e-08 60.1 69 53.6
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 5.6e-08 60.1 69 52.2
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 5.6e-08 60.1 69 53.6
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 5.6e-08 60.1 69 53.6
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 7.3e-08 59.7 69 52.2
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 7.3e-08 59.7 69 52.2
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 9.5e-08 59.3 69 50.7
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 9.5e-08 59.3 69 50.7
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 9.5e-08 59.3 69 52.2
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 9.5e-08 59.3 69 52.2
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 9.5e-08 59.3 69 50.7
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 9.5e-08 59.3 69 50.7
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 50.7
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 53.6
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 53.6
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 53.6
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 53.6
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 50.7
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 50.7
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 50.7
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.2e-07 58.9 69 50.7
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 53.6
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 53.6
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 52.2
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 52.2
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 53.6
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 53.6
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 50.7
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 50.7
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 53.6
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 52.2
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 1.6e-07 58.5 69 52.2
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 2.1e-07 58.2 69 50.7
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 2.1e-07 58.2 69 50.7
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 2.1e-07 58.2 69 49.3
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.1e-07 58.2 69 52.2
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 2.8e-07 57.8 69 52.2
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 2.8e-07 57.8 69 52.2
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 2.8e-07 57.8 69 50.7
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 2.8e-07 57.8 69 50.7
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 2.8e-07 57.8 71 47.9
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 2.8e-07 57.8 69 50.7
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 2.8e-07 57.8 69 50.7
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 3.6e-07 57.4 69 52.2
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 3.6e-07 57.4 69 52.2
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 3.6e-07 57.4 69 52.2
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 3.6e-07 57.4 69 50.7
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 3.6e-07 57.4 69 49.3
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 6.2e-07 56.6 69 50.7
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 6.2e-07 56.6 69 50.7
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 6.2e-07 56.6 69 50.7
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 6.2e-07 56.6 69 49.3
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 6.2e-07 56.6 69 49.3
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 6.2e-07 56.6 69 50.7
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 6.2e-07 56.6 71 47.9
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 8.1e-07 56.2 69 49.3
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 8.1e-07 56.2 69 52.2
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 49.3
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 52.2
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 49.3
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 49.3
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 50.7
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 50.7
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 50.7
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 1.1e-06 55.8 69 46.4
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 1.4e-06 55.5 69 50.7
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 1.4e-06 55.5 69 49.3
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 1.4e-06 55.5 69 49.3
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 1.8e-06 55.1 69 47.8
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 1.8e-06 55.1 69 47.8
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 1.8e-06 55.1 69 50.7
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 1.8e-06 55.1 69 47.8
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 1.8e-06 55.1 71 46.5
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 1.8e-06 55.1 69 49.3
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 1.8e-06 55.1 71 46.5
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 2.3e-06 54.7 69 49.3
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 2.3e-06 54.7 69 49.3
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.3e-06 54.7 69 49.3
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 3.1e-06 54.3 69 47.8
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 4.0e-06 53.9 37 73.0


User provided reference genes

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