Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 2.1e-301 1038.5 621 100.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.7e-107 393.7 698 43.0
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.1e-97 361.7 699 41.5
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 4.8e-96 356.3 623 45.1
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 2.4e-95 354.0 705 40.0
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 7.4e-89 332.4 662 41.2
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.4e-87 328.2 626 44.6
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 5.3e-87 326.2 689 42.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.0e-82 312.0 650 39.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.4e-79 301.6 645 42.6
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.2e-78 298.5 668 36.5
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.0e-78 297.7 697 42.6
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.5e-78 296.6 678 36.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.5e-78 296.6 678 36.0
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.0e-77 295.4 523 42.1
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 2.5e-76 290.8 626 44.6
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 7.2e-76 289.3 643 42.3
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.7e-75 287.3 656 38.0
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.6e-75 287.0 626 44.4
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.0e-73 281.2 710 36.2
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.0e-73 281.2 656 37.2
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 5.7e-73 279.6 631 43.1
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.8e-72 277.3 616 37.2
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 4.8e-72 276.6 681 37.9
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.4e-71 274.2 689 38.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.1e-71 273.5 657 39.7
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.5e-70 271.6 675 38.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 7.7e-70 269.2 654 36.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 1.0e-69 268.9 636 38.5
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.8e-69 266.9 698 35.4
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.5e-69 266.2 703 34.3
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 5.5e-68 263.1 665 35.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.3e-65 253.8 635 40.9
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 9.7e-65 252.3 630 34.0
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.5e-62 243.8 623 34.7
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.5e-60 237.7 739 31.5
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.2e-59 235.3 621 34.6
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.0e-58 230.3 705 32.2
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 6.7e-58 229.6 628 33.4
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.1e-57 228.8 671 37.1
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.6e-54 218.4 612 33.5
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.6e-54 218.4 649 35.6
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.6e-54 218.4 657 37.1
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.3e-53 215.3 613 36.2
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 1.2e-51 208.8 695 30.4
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.7e-51 206.8 661 34.9
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 6.1e-51 206.5 642 38.0
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 8.8e-50 202.6 370 39.5
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.4e-49 200.7 654 38.1
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 3.4e-49 200.7 623 34.2
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 7.5e-49 199.5 746 30.8
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.5e-49 199.5 640 37.2
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 7.5e-49 199.5 619 37.0
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.7e-48 198.4 628 35.5
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 3.7e-48 197.2 619 35.4
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 4.8e-48 196.8 643 38.1
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.4e-47 195.3 620 35.3
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.4e-47 194.5 640 36.1
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 9.1e-47 192.6 643 38.4
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.7e-46 191.0 612 34.2
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 3.5e-46 190.7 618 40.0
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.0e-45 186.8 270 42.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.5e-44 184.5 614 33.9
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 3.2e-44 184.1 653 29.4
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.6e-43 180.6 631 33.4
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 8.8e-42 176.0 615 30.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 2.6e-41 174.5 632 34.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.3e-40 172.2 624 32.4
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.7e-40 171.8 617 30.1
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.2e-38 165.6 655 28.5
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.0e-38 164.9 630 30.8
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.5e-38 164.1 612 35.0
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 5.9e-38 163.3 624 36.1
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 5.9e-38 163.3 620 30.6
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 7.7e-38 162.9 614 33.4
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 9.5e-36 156.0 609 33.5
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 3.6e-35 154.1 608 30.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 8.9e-34 149.4 625 36.6
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.2e-33 149.1 180 56.7
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.6e-33 147.9 620 35.6
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.3e-32 145.6 619 27.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.4e-31 142.1 623 29.4
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.2e-31 139.4 578 29.4
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.2e-31 139.4 546 29.3
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.6e-30 138.7 632 35.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 7.8e-30 136.3 459 31.2
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.0e-29 136.0 611 27.7
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.5e-28 132.1 158 73.4
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 3.3e-28 131.0 635 34.8
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 5.6e-28 130.2 576 32.3
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 5.6e-28 130.2 618 27.2
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 5.6e-28 130.2 619 28.4
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 7.3e-28 129.8 226 39.4
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 2.8e-27 127.9 606 26.1
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.8e-26 125.2 653 31.5
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.3e-26 124.8 623 28.4
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.1e-26 124.4 262 37.8
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.0e-25 121.7 617 28.4
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.0e-25 121.7 521 27.4
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.4e-25 120.9 78 78.2
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.8e-25 120.2 262 34.7
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 5.8e-25 120.2 175 44.6
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.3e-24 119.0 194 44.3
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 3.7e-24 117.5 264 36.0
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 3.7e-24 117.5 78 74.4
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 8.3e-24 116.3 629 26.6
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.2e-23 114.4 74 79.7
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 9.2e-23 112.8 621 34.1
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.2e-22 112.5 168 51.8
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 2.0e-22 111.7 493 28.8
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 6.0e-22 110.2 621 30.0
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 6.0e-22 110.2 576 31.1
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 1.7e-21 108.6 173 42.2
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.0e-21 107.1 76 68.4
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 6.6e-21 106.7 167 55.7
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 8.6e-21 106.3 75 69.3
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.1e-20 105.9 224 37.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.3e-20 104.4 75 72.0
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 4.3e-20 104.0 75 69.3
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 5.6e-20 103.6 536 32.1
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.5e-20 102.8 166 41.0
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 3.6e-19 100.9 632 26.6
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 6.2e-19 100.1 75 68.0
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.3e-18 98.2 202 34.7
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 3.1e-18 97.8 159 39.0
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 4.0e-18 97.4 223 47.1
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.0e-18 97.4 75 66.7
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 8.9e-18 96.3 74 68.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.2e-17 95.9 585 25.5
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.2e-17 95.9 626 26.0
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.2e-17 95.9 161 54.0
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.5e-17 95.5 75 65.3
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.6e-17 94.7 162 43.2
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.6e-17 94.7 75 64.0
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.8e-17 93.6 188 43.1
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.9e-16 90.5 192 48.4
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 8.3e-16 89.7 168 48.8
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 8.3e-16 89.7 153 39.9
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 3.2e-15 87.8 75 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 4.1e-15 87.4 162 35.8
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 7.1e-15 86.7 162 50.0
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.3e-12 77.8 74 56.8
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 2.4e-07 61.6 42 71.4
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.6e-06 58.9 124 34.7


User provided reference genes

Program Settings