Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 0.0e+00 2369.0 1178 100.0
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 0.0e+00 1098.2 1305 49.5
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 0.0e+00 1083.6 1335 49.0
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 1.0e-309 1067.0 1321 48.8
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.9e-303 1046.2 1257 49.2
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 4.9e-291 1005.0 1307 45.0
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 6.4e-283 978.0 1300 46.6
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 6.2e-278 961.4 1300 45.8
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 2.6e-276 956.1 1299 46.0
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 6.6e-272 941.4 1267 44.4
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 2.6e-268 929.5 1281 44.3
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 7.6e-260 901.4 1407 41.4
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 9.2e-258 894.4 1428 40.1
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 2.1e-257 893.3 1205 45.2
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.5e-255 887.1 1364 41.9
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.3e-255 885.9 1198 45.9
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.2e-249 867.5 1343 41.4
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 4.3e-247 859.0 1331 42.2
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 8.1e-246 854.7 1245 43.2
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.2e-244 850.9 1239 44.1
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.4e-242 843.2 1297 41.7
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.3e-240 837.4 1338 40.8
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 7.4e-239 831.6 1289 41.7
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 2.9e-235 819.7 1301 41.0
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 6.0e-233 812.0 1312 40.1
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.1e-232 808.9 1330 40.3
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 4.3e-231 805.8 1209 41.9
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.7e-230 802.7 1605 36.3
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 8.2e-222 775.0 1321 39.4
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 5.9e-220 768.8 1219 41.0
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 8.5e-219 765.0 1162 42.9
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 3.7e-214 749.6 1231 40.0
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 1.8e-213 747.3 1219 40.1
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 4.2e-210 736.1 1269 39.4
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 3.6e-209 733.0 1316 39.0
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 6.7e-208 728.8 1249 38.8
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.4e-205 720.3 1380 36.8
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 9.1e-205 718.4 1374 36.8
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 6.5e-203 712.2 1197 38.9
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.3e-200 703.7 1275 37.5
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 6.7e-200 702.2 1244 37.8
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 8.8e-200 701.8 1197 40.5
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 3.3e-199 699.9 1234 37.9
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 9.7e-199 698.4 1237 38.4
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 3.5e-196 689.9 1389 35.8
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 3.5e-196 689.9 1209 38.1
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 5.9e-196 689.1 1309 37.1
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.7e-195 687.6 1199 38.8
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 2.7e-193 680.2 1323 36.6
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 3.3e-191 673.3 1470 33.8
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 1.3e-190 671.4 1249 36.4
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 3.1e-189 666.8 1252 36.3
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 1.0e-187 661.8 1247 37.2
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 1.3e-187 661.4 1232 37.1
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 2.2e-187 660.6 1239 37.6
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.0e-187 659.4 1236 36.7
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 5.5e-186 656.0 1291 36.2
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 3.0e-184 650.2 1325 35.4
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 8.8e-184 648.7 1233 36.7
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.4e-183 646.7 903 43.6
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.3e-182 644.8 1326 35.2
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.3e-182 644.8 1326 35.2
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.7e-182 644.4 1221 36.0
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 2.8e-182 643.7 1320 35.0
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 2.0e-180 637.5 1337 34.9
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.7e-180 637.1 1279 36.4
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.7e-179 634.4 1202 36.9
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 4.2e-178 629.8 1312 34.5
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.6e-177 627.9 1241 35.3
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 2.8e-177 627.1 1309 35.3
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.2e-175 621.7 1191 35.6
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.1e-173 613.6 1182 37.4
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.0e-171 608.6 935 41.1
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 8.6e-171 605.5 1568 30.7
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 2.1e-169 600.9 1568 30.6
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 1.8e-165 587.8 1162 36.9
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 2.4e-165 587.4 852 43.5
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.6e-164 584.7 1438 32.8
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 7.5e-159 565.8 1227 35.3
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 1.6e-156 558.1 1017 37.9
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.2e-153 546.2 1238 34.6
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.4e-152 545.0 1545 30.4
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 8.9e-152 542.3 1222 32.8
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 9.2e-149 532.3 1475 29.5
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.0e-144 516.9 911 40.6
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 5.2e-144 516.5 911 40.6
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 3.6e-137 493.8 1360 29.6
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.8e-136 491.5 530 49.8
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 2.4e-136 491.1 1263 32.9
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.6e-132 478.4 1176 31.5
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.1e-132 478.0 1207 32.6
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.0e-131 475.7 1227 30.0
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 1.2e-127 462.2 1220 30.2
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 1.7e-126 458.4 1057 33.6
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 4.9e-126 456.8 1181 31.6
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 7.1e-117 426.4 1236 29.5
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 1.9e-114 418.3 589 43.5
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 7.9e-100 369.8 281 63.3
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 7.9e-100 369.8 625 40.6
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.3e-99 368.2 792 35.1
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.1e-98 365.9 711 36.3
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 9.4e-93 346.3 265 62.6
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 6.7e-91 340.1 367 53.4
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 2.2e-89 335.1 1207 28.2
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.8e-78 297.7 150 95.3
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.4e-74 284.3 239 61.5
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.8e-72 278.9 207 66.2
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.7e-71 275.0 209 66.0
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 1.9e-69 268.9 445 40.0
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.2e-60 239.6 438 32.4
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 3.4e-50 204.9 860 27.0
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 7.8e-47 193.7 119 76.5
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 4.3e-45 188.0 125 72.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 2.6e-42 178.7 111 73.9
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 7.5e-42 177.2 141 58.2
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 2.7e-39 168.7 1154 23.0
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.1e-35 156.8 188 46.8
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 1.8e-35 156.0 154 52.6
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 7.5e-34 150.6 70 100.0
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 9.2e-32 143.7 69 97.1
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.7e-31 142.1 69 95.7
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.3e-30 139.8 90 72.2
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.3e-30 139.0 219 44.7
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.9e-30 138.3 82 72.0
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.9e-25 122.1 76 72.4
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 5.4e-24 117.9 422 24.9
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 8.1e-20 104.0 82 65.9
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 2.4e-19 102.4 84 59.5
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.0e-19 101.7 315 31.4
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 9.0e-19 100.5 126 38.1
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 8.4e-17 94.0 114 47.4
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.6e-15 89.7 117 44.4
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 4.6e-15 88.2 68 61.8
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 1.7e-14 86.3 124 36.3
Oeu028720.1 Olea europaea HOM05D004942 ORTHO05D005687 1.9e-13 82.8 268 32.5
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 6.2e-12 77.8 122 38.5
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 4.5e-10 71.6 107 38.3
SHI10795 Sapria himalayana HOM05D004942 ORTHO05D005687 4.2e-08 65.1 54 57.4
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 3.5e-07 62.0 103 30.1
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 7.9e-07 60.8 134 28.4
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 1.0e-06 60.5 105 35.2
PSO541G2259 Papaver somniferum HOM05D001049 ORTHO05D049301 6.7e-06 57.8 89 43.8


User provided reference genes

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