Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.3e-277 959.1 483 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 5.3e-228 794.3 506 78.3
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 6.3e-221 770.8 506 75.7
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 3.5e-219 765.0 509 75.4
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 7.7e-219 763.8 491 77.8
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.2e-216 756.5 507 74.0
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.1e-216 755.7 512 73.6
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 6.1e-216 754.2 509 74.1
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.4e-215 753.1 509 73.7
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.4e-215 753.1 512 73.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.8e-215 752.7 512 73.0
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.0e-215 751.9 509 73.5
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.5e-214 749.6 509 73.5
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 3.4e-214 748.4 512 72.7
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 4.8e-213 744.6 509 72.5
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.3e-210 735.7 509 72.1
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.3e-210 735.7 510 71.8
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 6.5e-210 734.2 487 74.3
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 8.6e-210 733.8 483 76.0
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.5e-209 733.0 512 71.3
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 1.9e-209 732.6 507 71.4
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.5e-209 732.3 487 74.5
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 2.5e-209 732.3 510 72.0
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.2e-209 731.5 507 72.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 9.5e-209 730.3 513 71.9
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.2e-208 729.9 486 74.5
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 3.6e-208 728.4 507 71.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.0e-208 727.2 526 69.8
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.8e-207 726.1 512 70.7
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.3e-207 725.7 512 71.3
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.7e-206 721.1 509 70.3
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 3.7e-205 718.4 511 69.1
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.4e-204 716.5 510 70.6
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 7.0e-204 714.1 508 68.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.0e-203 712.6 509 68.4
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.0e-202 710.3 471 74.1
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 2.9e-202 708.8 512 69.7
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.9e-201 706.1 512 68.9
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.5e-201 705.7 509 69.4
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.2e-200 703.4 509 69.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.6e-200 701.8 509 68.8
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.0e-199 700.3 503 69.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.3e-199 699.1 508 68.3
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.2e-199 698.0 509 68.4
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.2e-199 698.0 482 72.2
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 5.2e-199 698.0 480 71.2
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 5.2e-199 698.0 512 67.6
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.9e-199 697.2 509 68.2
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.5e-198 696.4 509 68.8
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 4.4e-198 694.9 509 68.4
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.9e-197 691.4 511 67.1
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 4.9e-197 691.4 504 68.1
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 8.3e-197 690.6 506 67.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 3.2e-196 688.7 510 67.1
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 5.4e-196 688.0 483 70.4
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 9.2e-196 687.2 507 66.3
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.6e-195 684.9 478 71.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 7.8e-195 684.1 509 66.8
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.0e-194 683.7 509 67.4
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.7e-194 682.9 504 67.1
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 5.0e-194 681.4 510 66.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 6.6e-194 681.0 509 66.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.1e-193 680.2 510 66.3
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.9e-193 679.5 509 66.0
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.3e-193 678.3 505 67.1
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 4.7e-192 674.9 506 66.2
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 8.0e-192 674.1 506 67.0
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.1e-191 673.7 491 67.8
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.1e-191 673.7 489 67.7
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.4e-191 673.3 496 67.3
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.4e-191 673.3 503 66.0
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.3e-191 672.5 473 68.7
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.1e-191 672.2 495 66.5
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.6e-190 669.1 490 67.6
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 2.6e-190 669.1 506 66.4
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 3.4e-190 668.7 442 75.1
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.4e-190 668.3 476 71.8
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 5.8e-190 667.9 482 67.6
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 5.8e-190 667.9 482 68.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.8e-190 667.9 509 66.8
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 8.3e-189 664.1 509 66.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 3.2e-188 662.1 509 64.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.9e-186 655.2 485 66.6
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 4.3e-185 651.7 476 66.4
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.2e-184 650.2 442 71.5
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 6.2e-184 647.9 475 66.7
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 6.2e-184 647.9 475 66.7
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 6.2e-184 647.9 475 66.7
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 8.1e-184 647.5 466 69.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 3.1e-183 645.6 482 68.3
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.5e-182 643.3 506 62.6
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.5e-182 641.0 441 71.4
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.7e-181 639.8 458 72.5
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.9e-181 639.0 440 71.1
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 6.4e-181 637.9 454 68.9
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 8.3e-181 637.5 481 66.5
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 7.1e-180 634.4 442 72.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 7.8e-179 630.9 506 62.1
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.5e-174 616.7 472 66.7
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.6e-174 614.4 407 74.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 9.9e-174 614.0 467 65.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 9.9e-174 614.0 468 64.1
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.2e-173 612.8 477 63.9
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 3.6e-168 595.5 474 61.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.0e-167 592.0 456 64.5
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 9.0e-167 590.9 418 68.9
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-166 590.1 482 61.4
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.2e-165 586.3 469 63.5
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.9e-165 585.1 385 75.3
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.3e-162 577.0 468 61.5
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 4.2e-156 555.4 442 63.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.1e-148 530.8 453 58.7
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 9.3e-140 501.1 474 53.4
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 3.5e-139 499.2 450 55.1
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.8e-138 496.9 298 82.6
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 7.4e-137 491.5 484 53.3
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.5e-134 483.8 347 70.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.5e-129 466.5 299 75.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.3e-128 461.8 295 76.9
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.1e-127 459.1 295 76.3
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 4.7e-123 445.7 474 48.3
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.0e-122 444.5 339 66.1
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.1e-119 433.0 439 51.9
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.4e-106 391.0 281 67.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 4.1e-103 379.4 376 54.3
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 8.6e-93 345.1 618 35.9
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 6.1e-91 339.0 557 39.1
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.4e-90 337.8 248 64.9
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.3e-77 294.7 449 41.0
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 4.7e-75 286.2 468 38.9
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.0e-57 227.6 122 84.4
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 4.4e-49 199.9 175 61.1
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 9.6e-44 182.2 215 49.3
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.2e-40 171.0 108 79.6
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.7e-38 164.1 213 43.2
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 5.1e-37 159.8 318 36.2
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.7e-32 144.8 237 39.2
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.9e-31 141.4 118 60.2
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.5e-31 141.0 99 67.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.1e-28 132.1 87 70.1
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 3.2e-23 114.0 76 68.4
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 3.9e-21 107.1 68 80.9
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 7.4e-20 102.8 69 65.2
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.7e-14 84.3 83 51.8
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 3.6e-06 57.4 38 71.1


User provided reference genes

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